Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4995 ATGAGACTGTCAAGGCTGATGAGAAACCTGTTGGCCTCTCCCGCGGAAGAAAACTTTATAAACCATAACACTCCACTTAACAACGATGCGGCTTCCAAACAGGGTCCATGTTGGTCTCAGCTCAAGTTCGCCGCTGCACTTAAGTCTGAAATCCCTAGTGTATTATTCGATAGCATTCATGTTATTTTGCTTACTCTGAGAAAGCGTTTGGAATTCCTTTACACTGAGGGTTGCCAATCTGCATCTATTTGCCTGAGGAATCTTAACTGGGATTTCTTGGACATTGTCACATGGCCCATGTTCTTGGCCGAGTACCTTCTGATTCACAGTTCACAATATAAAACTAGTTTTGATGCTAACCTCTCAATATTGGTAACTGATTACTACAAACAACCTGTCATTTTGAAGCTTGAGATTCTTCAGTGCTTGTGTGATGATATGATTGAAGCAGACACCATAAGGAAAAAGAAAGCTGTAATGGATGTTTCTGGAGGCACTTCCTTCACTGAGGAGATGGTAGATGAAACAACTGACTTGAACAGTGATGAATGTTGCCTTTGCAAGATGGATGGAAATTTAATACGTTGTGATGGTTGCCCTGCTGCATACCACTCAAGGTGTGTCGGAATTGCAAGTAACAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCTATTGGCAAACACCAGGCATCGAGGAAATCACGAAGGTCACTCCGAGGAGCAGACTTGTTGGGGATGGATCCTCACGGCTGTCTTTATTTTGGTAGTTGTGGTTACCTGTTAGTTTCAAAGTCATCAGATGCGAGGTCCTTGTTCAATTACTACCATGTAAATGATATACCTGTTGTGATTGAAGTTCTAGAATCCGTGGATACTTTATATGGAGACTTATTAATGGCTATCTACAAGAGTTGGGATATTCCGGTTGACTTAAATGCAGGGGCTAGTAATTTGGCAGTCTTTAATCAAAGTTCATTCAAGAACATGCAAATGACAGCTAAATATTATTCTACGTCCACATCTTTAGCACCTTTTACTTCTTCAGTAACATTTATGGACAAAACTCTAGTTGATGATCAGAAAAAGTTGGAGAAAAATTCAACTATTGACTCGACAATAGAAAGTCCTTGTATTGCCTCAGAAGGATCAGCTAATACAACACAGATGAGATCTGGCATTGAGAGTATTCAGATGCACAGGCTATACGATTCCAATAGATCGGATGAATCCTTAAATCAATCAAGAATACCAGAAAAAGACTTTCCTGTTGGTGACTGTTCTTTGGCATCTGGCATTGAGAACCAGACGGGGAACATAATATCAAGTGAAGATCCAGCACTGATTTTGTACACTAGCGGGACAACAGTTAAAATTCTGTCTGGAGGATGCAGTCATGATATGATGAAGAAACTTGCACATTGCCTAGCACTGCTTCCAAAATCAAAAGGAGATGAAGAAAGTTGGTCTGTGATGTTGCAGAAAATTTTGATTTTAATAAATGATCAATTAAATTTGAAGTTTGAAGGTCTAGAAGAAGATTACATTCGAAAAGAGTTCAACAGATTGTTGAGTCTTCCCGGGAAACAACCTCCACCACCGTTAGGAGGCCATGTTTCCTCTAAAGAAGCTAGTGACAACACAACAAAGAGGTCTAAACAATCACGAACGTCTCTACACTTATGTCTAGTTGTTGCATGCTGCTCACAAATGCTTATCAAGTTAAGCCTGGAATTGCTTACAGCTATTGTAAAGGCCACAGGCAGTCAACCATTACCACATGCTGCCTCTATTGTACGTTTAATTACGAAGTACTTCAAGACATGTGAGCTTCCAGAAATAAGGATTAAGGTCTATTCAGTTGCAGAGATTATGCTCATATCCATGGGTGTTGGAATGGCTTTATGCCTGTTAAAGGAAGTGTCGATATTGTTATTGCTGCAGGTGGAATATCGGGGGTTAATTCCGCTGTCTACGTCGATGGTTGAGCCGCTGCAATTGCCGTCACCGTTTGATTGTGTTTTGGGTGGACCTTGGTTTCAGAATGGATATAGATCTAATGTTGTCACTTTTCTTCTTGATCGGATCAAGGAATGTGGATTGGTTTCTAGTCATGGAAATGGTACCATGCTGGCTGCACTGTTTCATGTTCTTGCTTTAATTCTTAATGAGGACGTTGTAGCAAGGGAAGCTGCTTCAAAAAGTAGCTTCATCAAAATTGCATCAGATATACTCTATCAGTGGGATTCAAGTCTCGGTCAAGGGGAGAAAGGCCAGATTCCTAAATGGGTCACGGATGCTTTTCTTGCATTAGACAGGTTGCTGCAAGTGGATGAAAGAGTGAATTCTGAAATTGTAGAGCAGTTGAAGAAGGAAGTTGTGAATAATACGCAGACATCACTTACCATTGATGATGATAAGCAACACAACTTACAGTCTGCATTGGGCCTGTCTTCCAAGTATGCAGATATACATGAGCAGAAGAGACTTGTTGTAGATTGCCCAACAGAATATCACTTGGAAGCATTATTGTCGGTAAAATCACTAGCTACTTATGGTGATCAAGTGGGAAACATGTCAAAGAGTGTTGCATGCGTAATTCACTTAACACCTGAATTTGTTAGTTTCAGGATATTTCCAATGTTCGATGCTAGACTTCATAGCCTACAAATTTTATTTGCTATGCAAGGTTTATCATTACTCAAAGTTGGTGGAGGAATGGTTTACTCTACGTGCTCAATGAATCCTATTGAAAATGAAGCTGTGGTTGCAGAGCTTTTGCGGAGGTGTGGCGAGTCTGTCAAACTTCTTGATGTGTCTAGTGAGCTTCCACAACTAATTCGTCGGCCAGGTTTGTCGGGTAATGCATATGGTCTTGTTGCTGAGGTAATGAGGAAATTAGTATCCATTGCTCCAATTCACTGTCAGCTTTTTGTCTCGCACCTGTCGGGAGCAGTTCGTGACTTGACTTCATCTGTTATGGATGAATTACGCACTTTCAGTGAAGCAATAAAAGCTCTTCTTACTACGTCTGCTAATGGTGCTTTGATTTTGAGGGTTTTGCAAGCCTTGAGTTCCTTTGTCACCTCATCGACTGAGAAAGAGAACGATGGAATTTCTCGGGCTTATTTTGAGTTTTCTGAAATCAATCCAGTATTAGAGCCCTTGTGGCATGAACTGAGCTGCTGCATAAGCAAGATAGAATCCTACTCTGAGCCAGCATCTGAGATTTCAACACCTTTCATTTCCATCGGGTCAGCACGACTTATGAACATCAGCACCTCAATTCACACCTCCTCCCTACAAGCATCAAACAATACATATCATATTCAAGTGAATTCGCAGCCGTGA 3354 0.4106 MRLSRLMRNLLASPAEENFINHNTPLNNDAASKQGPCWSQLKFAAALKSEIPSVLFDSIHVILLTLRKRLEFLYTEGCQSASICLRNLNWDFLDIVTWPMFLAEYLLIHSSQYKTSFDANLSILVTDYYKQPVILKLEILQCLCDDMIEADTIRKKKAVMDVSGGTSFTEEMVDETTDLNSDECCLCKMDGNLIRCDGCPAAYHSRCVGIASNNLPEGDWYCPECAIGKHQASRKSRRSLRGADLLGMDPHGCLYFGSCGYLLVSKSSDARSLFNYYHVNDIPVVIEVLESVDTLYGDLLMAIYKSWDIPVDLNAGASNLAVFNQSSFKNMQMTAKYYSTSTSLAPFTSSVTFMDKTLVDDQKKLEKNSTIDSTIESPCIASEGSANTTQMRSGIESIQMHRLYDSNRSDESLNQSRIPEKDFPVGDCSLASGIENQTGNIISSEDPALILYTSGTTVKILSGGCSHDMMKKLAHCLALLPKSKGDEESWSVMLQKILILINDQLNLKFEGLEEDYIRKEFNRLLSLPGKQPPPPLGGHVSSKEASDNTTKRSKQSRTSLHLCLVVACCSQMLIKLSLELLTAIVKATGSQPLPHAASIVRLITKYFKTCELPEIRIKVYSVAEIMLISMGVGMALCLLKEVSILLLLQVEYRGLIPLSTSMVEPLQLPSPFDCVLGGPWFQNGYRSNVVTFLLDRIKECGLVSSHGNGTMLAALFHVLALILNEDVVAREAASKSSFIKIASDILYQWDSSLGQGEKGQIPKWVTDAFLALDRLLQVDERVNSEIVEQLKKEVVNNTQTSLTIDDDKQHNLQSALGLSSKYADIHEQKRLVVDCPTEYHLEALLSVKSLATYGDQVGNMSKSVACVIHLTPEFVSFRIFPMFDARLHSLQILFAMQGLSLLKVGGGMVYSTCSMNPIENEAVVAELLRRCGESVKLLDVSSELPQLIRRPGLSGNAYGLVAEVMRKLVSIAPIHCQLFVSHLSGAVRDLTSSVMDELRTFSEAIKALLTTSANGALILRVLQALSSFVTSSTEKENDGISRAYFEFSEINPVLEPLWHELSCCISKIESYSEPASEISTPFISIGSARLMNISTSIHTSSLQASNNTYHIQVNSQP* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4995 1117 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 42 411 - -
Psa6g4995 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 245 IPR013083 -
Psa6g4995 1117 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 884 956 IPR029063 -
Psa6g4995 1117 ProSiteProfiles Zinc finger PHD-type profile. 181 228 IPR019787 -
Psa6g4995 1117 ProSitePatterns Zinc finger PHD-type signature. 184 225 IPR019786 -
Psa6g4995 1117 PANTHER PHD FINGER FAMILY PROTEIN 42 411 - -
Psa6g4995 1117 Pfam 16S rRNA methyltransferase RsmB/F 890 939 IPR001678 GO:0008168
Psa6g4995 1117 SUPERFAMILY FYVE/PHD zinc finger 167 227 IPR011011 -
Psa6g4995 1117 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 885 968 IPR001678 GO:0008168
Psa6g4995 1117 MobiDBLite consensus disorder prediction 532 553 - -
Psa6g4995 1117 CDD PHD2_CHD_II 184 225 - -
Psa6g4995 1117 Pfam PHD-finger 184 226 IPR019787 -
Psa6g4995 1117 SMART PHD_3 183 226 IPR001965 -
Psa6g4995 1117 Gene3D Vaccinia Virus protein VP39 881 976 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4995 Psa-Chr6 433376493 433381312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4995 43 311 PHD Transcription Factor Family AT5G12400 46.465 6.70e-78 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa6g4995 Methyltr_RsmB-F 8.1e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4995 - - mtr:MTR_4g076180 574.704