Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g4972 | ATGGAGTTAATGAAAGTACCACGGGTAGAATCTAAGCTCAGAGTATTTTCATTCAAGATTCAGTTCCATTCTCAAGTTTCCGATCTTAAGAATAGCTTGAATGCTGTGAATGCTGCTTCAGAAGAGATCAAGAGTTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCCATTGGATTCAGATTAGATAGCCTTCTTAAACTGACTGAGACACGTGCACGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTGTTAGATGACAAATTGCCTGAAGTTTTAGACTTCTCTAAGGATCTTGCTAATCTAGAGCCAGTGGCAAAGATCCAATTGAAGTTCCTGGCAGAGGAGATGCAAACTATAAACAAAGGATTAGAGAAAATTGTACAGGAATTATCCACTTCTGAAAATGATGGTCCTATATCAGAAAAGTTCCGCAAGAAATTGAAAGACTTCCTCTGTTCTGCTGAAGCTGAAGTCCGCTCATTGGCTTCACTATATTCATGGGTGGGCAGGAACGTGGACGCATTAATTCTTTATTTTGGCGAAGATCCATCCCGCTGTCTATTCGAACAAGTTGTCACAACTTTGCTCAACTTCACTCAAATGTTCAACAAAGCCCACGAAGAAAACTGCAAACAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCAGAGAGGATATTACCTAAAGCAATCCGGACTGGCAATGTCAAATGA | 792 | 0.3939 | MELMKVPRVESKLRVFSFKIQFHSQVSDLKNSLNAVNAASEEIKSSVKLKRIMQTILTLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEPVAKIQLKFLAEEMQTINKGLEKIVQELSTSENDGPISEKFRKKLKDFLCSAEAEVRSLASLYSWVGRNVDALILYFGEDPSRCLFEQVVTTLLNFTQMFNKAHEENCKQLELEMKKTAESEKKKCESERILPKAIRTGNVK* | 264 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g4972 | 263 | Coils | Coil | 222 | 242 | - | - | |
| Psa6g4972 | 263 | PANTHER | FORMIN-J | 1 | 247 | - | - | |
| Psa6g4972 | 263 | Gene3D | Formin, FH2 domain | 1 | 252 | IPR042201 | - | |
| Psa6g4972 | 263 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1 | 247 | IPR015425 | - | |
| Psa6g4972 | 263 | PANTHER | FORMIN-LIKE PROTEIN | 1 | 247 | - | - | |
| Psa6g4972 | 263 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 2 | 242 | - | - | |
| Psa6g4972 | 263 | Pfam | Formin Homology 2 Domain | 1 | 222 | IPR015425 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g4972 | Psa-Chr6 | 432168096 | 432170082 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g4972 | 1 | 246 | Protein tyrosine phosphatase (PTP) family | AT5G58160 | 75.304 | 2.48e-126 | 386 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g4972 | - | - | cam:101513310 | 480.715 |