Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4960 ATGGCTAGGAGTTGGCTTATTGACATGGGAGGATTTGCAAAGAAAGTGAAAAGAACTACACTCTCTTTAGCTAATCAGATAAAGGATTGTGGCGCATATCGGGAATGTCCAAACTGTCACTGTCGTATAGACAATAGTGATGTTTCTAGCGAGTGGCCTGGCTTTCCGATTGGTATAAAGTTTGATCATTCTGATGTAGAATTATTAGACCATTTAGCGTCTAAATGTGGTGTGCTAAGAAAGATGGGAGTAGCATTCACTTTTTTTCACAGAACAATGAATGCATATAGTACTGGTAAACAAAAGCGTCAAAATACTCAACATCATGGTTCAACTAAAGATCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTGTAATAGAATATGGAGTACATAAGGGCTATAAGAAGATCTTGGTTTTGTATATAAGATCTGGGAAAGAGTCAAAATCCTACAAATCTGACTGGAAAATGCATCAGTACCATCCTGGGAATGATGAAGATGAGAAGAATGGAGAATATGTGTTTTCAAAA 537 0.378 MARSWLIDMGGFAKKVKRTTLSLANQIKDCGAYRECPNCHCRIDNSDVSSEWPGFPIGIKFDHSDVELLDHLASKCGVLRKMGVAFTFFHRTMNAYSTGKQKRQNTQHHGSTKDHVRWHKTGKTKAVIEYGVHKGYKKILVLYIRSGKESKSYKSDWKMHQYHPGNDEDEKNGEYVFSK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4960 179 Pfam No apical meristem (NAM) protein 86 163 IPR003441 GO:0003677|GO:0006355
Psa6g4960 179 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 80 179 IPR044799 GO:0003700
Psa6g4960 179 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 78 IPR044799 GO:0003700
Psa6g4960 179 SUPERFAMILY NAC domain 40 178 IPR036093 GO:0003677|GO:0006355
Psa6g4960 179 Gene3D NAC domain 63 179 IPR036093 GO:0003677|GO:0006355
Psa6g4960 179 ProSiteProfiles NAC domain profile. 35 179 IPR003441 GO:0003677|GO:0006355
Psa6g4960 179 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 78 - -
Psa6g4960 179 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 80 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4960 Psa-Chr6 431663878 431664512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4960 33 179 NAC Transcription Factor Family AT4G28500 37.017 2.29e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g4960 NAM 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4960 - - mtr:MTR_7g033320 281.567