Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4942 ATGGGAACTCAACATTGTGATTTGTCTGAAAAAACAACTCAGGTCGGCTCCGAGTGTTTAGACAACGAACAGAGAGTACTTGGTACTGTGGTAACCGATTCTGTTATTGATGAAAAAAAAGCGCAGATCAGTTCTGAGTGTTTAGACAACGAACAGGGAGTACTTGGTACTGTGGTAACCAATTCTGTTATTGATGAAAAAACAGTTCAGATCGTCTCTGAGTGTTTAGACAACGAACAGAGTGTACTTGGTACTGTGGCAACCGATTCTGTTATTGATGAAAAATCAAATAAAATTTTGGCAAATATGACTGAGAACTCTGTTATTCAACTGCCTAAACCCTCGGAACATGTCCCTGTTTGCTTATCTGATGACAAGTCGGAAAACAAATGTGTTCAAAATGTTCAAAATAAACCTGGGGAAACGAGTGACGCAGTAGCTTCCGTCGTTGTTGAAGAACAAACACAACCTGTTCCTGCTCAAGTGAACTTGGATTCTGCGAATAAGCCATCAGACCCACCTTCTGGAGACGGTGTGAAAGATATTAGCCTTCCAAATGAGCCTGGTGAAATGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAAGCCGTTCCTGCTCAAGTGAACTCGGATTCTGCGCATAAGCCATCGGATCCACCTTCTGGAGATGGTGTGAAAGTTATTAGTCTTCCAAATGAGCCCGGTGAAACGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAAACCGTTCCTGCTCAAGTGAACTCGGATTCTGCGAATAAGCCATCGGATCCACCTTCTGGAGATGGTGTGAAAGTTATTAGTCTTCCAAATGAGCCTGGTGAAACGAGTGATGCAGTAACTTCCCTTGTTGAAGAACAAACACAACCCATTCCTGCTCAAGTGAACTTGGATTCTGCGAATAAGCCATCAGATCCACCTTCTGGAGGTGGTCTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACGAGTGATGCAGTAACTTCCCTTGTTGTTGAAGAACAAACACAACCTCCTGCTCAAGTGAACTCGGATTCTGCGAATAAGCCATCAGATCCACCTTCTGGAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAACGAGTGATGCAGTAACTTCCCTTGTTGTTGAGGAAAAAACACAACATCCTGCTCAAGTGAACTCGGATTCTGCGAATAAGCCATCAGATCCACCTTTTGGAGATGGCGTGAAAGATATTAGTCTTCCAAATGAGCCTGGTGAAATGAGTGATGCAGTAACTGGCCCTGTTGAAGACCAAACACAATCTGCTCTTGCTCAAGTGAATGCAGATTCTTTGAACAAGGTACTGGATCCACCTTCTGGAGATGTTGCTAAAACTGTTAGCTCTGATTGTTCAGAAGGAAGGTCTAAAAGCTTAGCTCGTTCAAGATCGAGACACATGGGTAAAAGTAACTCGAAACCACCGAAGAAGTATATATTGAGGTCGTTGGGAAGCAGTGACAGGGCTCTGCGGTCAAGAGATAATAAACCTAAAGCTCCTGAACCAATTAATAATGTTGTTGATGTTAACAATGATGAAACAAATACAAAAAAAGAGAAGAAGAAAAAGAAAAAGGCAAGAAAAGAGGGAATTAATGATCAATTTTCTAAAATCAGAGCTCAATTGAGATATTATTTAAACCGAATGGGCTACGAACAGAACTTGATCGATGCGTATTCTGGTGAGGGCTGGAAAGGAGGCAGTTTGGAAAAATTAAAGCCCGAGAAGGAGATTCAACGAGCTAAGTCTGAAATTCTTCGACGGAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCTGAATCATTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTCTGTGCAAAATGTCAGACCAAAGTGTTGGGCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGAGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATTGATATTGTTAATGACCTGTTAGGGACAAGTCTCTCTCTTACTGACACATGGGAGAGGGTTTTCCCCGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATAACAACTTGGGACTTCCTTCAGATGATTCTGATGACGATGATTATAATCCAAATGGTCCAGAGGATGTGGAGGTTGAAGGAGGTGAATCTAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAATTTAGAGGAGACGCGTCATGAGGATCAATACATGGGTCTTCCTTCTGAAGATTCAGAAGATGATGATTATGATCCTGATGCTCCAAATCTTGGTGGTAAAGCCACAGAAGAAAGTTCAAACTCTGATTTCACATCGGACTCTGAGGATCTTGCTGCCACAATTAAGGATAACATGTCCGTTGAACAAGTTGGTGATGTCACATCTGCATCGTTGGATAATGTTAAGAACAAAGGTTCTAAAAAACAAAATCGCAAGAAGCCATCTCTAGCTGACGAACTGTCATCTTTAGTTGAGCCAGATCTCGATGAAGAAGATATGACTCCGGCTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTATGAAGAGGCATACCACAGTGATACTAGTGAGGATGAAGATTGGGCTGCCACCACTACTCCAAGTAGAAAAAAGAAACTAACTGGCAAAATTACTCCAGTGTCACCAAATGGAAGTGCCTCAAATAATTCTAGACGTTCTACTAAGAGGAACACCCATCAGCATAAAGATAAAAATACAAATAACTCACCCACCAAAACACTTGAAGGATGCACCGAATCTGGTTCCAGGGGTAAAAAGCGTGGATCTCCACACAAAAAACTTGGAGAAGCTGCTGTTCAGAGGCTTTACAAATCTTTCAAAGAAAATCAATATCCAGAACGAGCCACAAAAGAAAGCTTGGCGCAAGAAATTGGACTCACATTTCATCAGGTTGACAAGTGGTTTGGAAATTCTCGATGGAGCTTTCGACATTCACCACATATGAAAGCAAGTCCAGGTAGTAATGCTTCGCAGCAGGCCACTGACAGCGAAGCTGAAAAGAAAGGAGAGATGGGAAATGCTTCACAGCAGGTCACTGACAATGGAGCCGAAAATAAAGGAGAGAAGGAACATGAATTAGTTTCCCAGAAGACTATTGGAGAAAAATCAAGAATCCCGAGTTCTAAGAAAAGGAAACAGCAGGCCACTGACAGCGGAGCTGAAAAGAAAGGAAAGATGGGTGATGCTTCACAGCAGGTCACTAACAATGGAGCCGAAAATAAAGGAGAGAAGAAACATGAATTAGTTTCCCAGAAGACTATTGGAGAAAAATCAAGAACCACTAGTTCTAAGAAAAGGAAGCAGCAAGCCACTGACAGCGGAGCTGAAAAGAAAGGAGAGATGGGTGATGCTTCACAGCAGGTCACTGACACCGGAGCCAAAAATAAAGGAGAGAAGAAACATAAATTAGTTTCCCAGGAGACTATTGGAGAAAAATCAAGAATCCTAAGTTCTAAGAAAAGGAAGCAGCAGGCCACTGACAGCGCAGCTGAAAAGAAAGGAGAGATGGGTAATGCTTCAGAGCAGGTCACTGACAATGGAGCAGAAAATAAAGGAGAGAAGGAATCTGGATTAGTTTCCCAGAAGACTATTGGAGAAAAATCAAGAACCCTGAGGTCTAGGAAAAGGAAGCAATTGTCTGAGCCGCAGGCATCTGAAGCAGGGTTGGCCCCTAAAGACCCAACCCCACCGAAAGTTGAAACAGGCAAGAAAACAAAGAAAAAGAAAGGGAAATGA 3942 0.4234 MGTQHCDLSEKTTQVGSECLDNEQRVLGTVVTDSVIDEKKAQISSECLDNEQGVLGTVVTNSVIDEKTVQIVSECLDNEQSVLGTVATDSVIDEKSNKILANMTENSVIQLPKPSEHVPVCLSDDKSENKCVQNVQNKPGETSDAVASVVVEEQTQPVPAQVNLDSANKPSDPPSGDGVKDISLPNEPGEMSDAVTSLVVEEQTQAVPAQVNSDSAHKPSDPPSGDGVKVISLPNEPGETSDAVTSLVVEEQTQTVPAQVNSDSANKPSDPPSGDGVKVISLPNEPGETSDAVTSLVEEQTQPIPAQVNLDSANKPSDPPSGGGLKDISLPNEPGETSDAVTSLVVEEQTQPPAQVNSDSANKPSDPPSGDGVKDISLPNEPGETSDAVTSLVVEEKTQHPAQVNSDSANKPSDPPFGDGVKDISLPNEPGEMSDAVTGPVEDQTQSALAQVNADSLNKVLDPPSGDVAKTVSSDCSEGRSKSLARSRSRHMGKSNSKPPKKYILRSLGSSDRALRSRDNKPKAPEPINNVVDVNNDETNTKKEKKKKKKARKEGINDQFSKIRAQLRYYLNRMGYEQNLIDAYSGEGWKGGSLEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCQTKVLGTNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIDIVNDLLGTSLSLTDTWERVFPEAATAAGSILDNNLGLPSDDSDDDDYNPNGPEDVEVEGGESSSDESEYASASENLEETRHEDQYMGLPSEDSEDDDYDPDAPNLGGKATEESSNSDFTSDSEDLAATIKDNMSVEQVGDVTSASLDNVKNKGSKKQNRKKPSLADELSSLVEPDLDEEDMTPASGKRNVERLDYQKLYEEAYHSDTSEDEDWAATTTPSRKKKLTGKITPVSPNGSASNNSRRSTKRNTHQHKDKNTNNSPTKTLEGCTESGSRGKKRGSPHKKLGEAAVQRLYKSFKENQYPERATKESLAQEIGLTFHQVDKWFGNSRWSFRHSPHMKASPGSNASQQATDSEAEKKGEMGNASQQVTDNGAENKGEKEHELVSQKTIGEKSRIPSSKKRKQQATDSGAEKKGKMGDASQQVTNNGAENKGEKKHELVSQKTIGEKSRTTSSKKRKQQATDSGAEKKGEMGDASQQVTDTGAKNKGEKKHKLVSQETIGEKSRILSSKKRKQQATDSAAEKKGEMGNASEQVTDNGAENKGEKESGLVSQKTIGEKSRTLRSRKRKQLSEPQASEAGLAPKDPTPPKVETGKKTKKKKGK* 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4942 1313 MobiDBLite consensus disorder prediction 383 412 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 1141 1181 - -
Psa6g4942 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 712 IPR013083 -
Psa6g4942 1313 Gene3D - 990 1059 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 238 269 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 439 454 - -
Psa6g4942 1313 ProSitePatterns Zinc finger PHD-type signature. 651 702 IPR019786 -
Psa6g4942 1313 SMART PHD_3 650 703 IPR001965 -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 287 316 - -
Psa6g4942 1313 Pfam PHD-finger 650 705 IPR019787 -
Psa6g4942 1313 SMART HOX_1 985 1051 IPR001356 GO:0003677
Psa6g4942 1313 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 448 1110 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 1085 1126 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 335 365 - -
Psa6g4942 1313 ProSiteProfiles 'Homeobox' domain profile. 987 1047 IPR001356 GO:0003677
Psa6g4942 1313 MobiDBLite consensus disorder prediction 845 861 - -
Psa6g4942 1313 Pfam Homeodomain 999 1043 IPR001356 GO:0003677
Psa6g4942 1313 MobiDBLite consensus disorder prediction 1050 1064 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 929 955 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 1195 1231 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 1047 1313 - -
Psa6g4942 1313 PANTHER HOMEOBOX PROTEIN HAT3.1 448 1110 - -
Psa6g4942 1313 CDD homeodomain 998 1047 IPR001356 GO:0003677
Psa6g4942 1313 MobiDBLite consensus disorder prediction 201 219 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 764 1002 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 890 928 - -
Psa6g4942 1313 ProSiteProfiles Zinc finger PHD-type profile. 648 705 IPR019787 -
Psa6g4942 1313 Coils Coil 534 554 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 201 555 - -
Psa6g4942 1313 CDD PHD_PRHA_like 650 702 IPR045876 -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 783 798 - -
Psa6g4942 1313 SUPERFAMILY FYVE/PHD zinc finger 640 708 IPR011011 -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 157 178 - -
Psa6g4942 1313 SUPERFAMILY Homeodomain-like 985 1047 IPR009057 -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 981 1000 - -
Psa6g4942 1313 MobiDBLite consensus disorder prediction 818 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4942 Psa-Chr6 430800708 430808882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4942 546 1082 Homeobox Transcription Factor Family AT3G19510 45.534 3.80e-127 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Psa6g4942 PHD 6.4e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4942 - - cam:101500744 1141.33