Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4940 ATGAGCATGTTGTCGTTGAGGACGGAATTAGCGAAGAGGCACATTATCATTGGAGCTTATAATACGGTCGAAGCTTGTGATTGGTTTGGTGCGGGAGTGCTGGCGTTCTCTGGTTCTTTTAGCAACTTCTTTGCTGGGAATACCATTGTTTTCAAGGATGATATTTTAAACAAGATAGATAAGATTAGTGAAAGAGAGTTGACGGAGGAGGAAAGTGGTCCGAACGCAATGTCTTGCGGCGTGGGGAACAGCTGGAAAGACAAATATATAACTCACGCGCTACGTCGTCGTTTTAATCTTTCTCACTCGCGCTTTTCCCCCACTCGCGGATCCACTTCACATTTTCGTACTCGCTCGCAGCTCGTGATCCTTCCCCGCTTTTTAAGTGAGTGGCTGCAGTCAGACTACAGTTTAGATTGTGGAAGGTGCTTAGAATGGAATGATGGTAGTGCAGTGAGTGGAGGTATGGGTGATGCGGTCAATGAAGAGGATTGCAGGGGTAGTGCACTTGTTGCTTCTCCTAAGAGGGACATAGCTTTCTTTGAAGGGGACAAAGATTTTGAGCCACCCAATGGGATTGAATTTGAATCTCATGAAGCAGCGTATTCATTTTATCAAGAATATGCCAAATCTATGGGATTCACCACTTCGATTAAGAACAGCAGGCGCTCGAAGAAGACCAAAGAGTTTATTGATGCTAAATTTGCGTGCTCTAGATATGGAGTAACGCCGGAGTCTGATAGTAGTAGTAGTCGAAGACCGAGTGTGAAGAAGACAGATTGCAAAGCTTGCATGCATGTGAAGAAAAAGCAAGATGGAAAGTGGATCATTCATGAATTTATAAAGGATCACAATCATGAACTTTTACCAGCTTTGGCGTATCATTTTCGGATTCATAGAAATGTGAAGCTAGCTGACAAGAATAATATGGATATCTTGCATGCCGTTAGCGAACGCACGAGAAAGATGTTTGTTGAAATGTCTAGACAATCTGGTGGCTGTCAAAATATTGGGTCTCTTGCGAGTGATATGAATTATCAGTTTGACAGAGGCCAGTATCTGGACGAGACTAAGCCAACTTTTGTTTGGTTACTGAAGACATGGCTTAGAGCGATGGGAGGACAAGTTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTCTTCCCAAATGCACAGCATTGCTTTTCTCTTTGGCACATATTGGAAAAGATACCTGAAAATTTGTCTTTTGTGATAAAACAGTATAAGAACTTCTTGCCAAAGTTTAACAACTGCATTTTTAAGTCTTGGACGGATGAAGAGTTTGACATGAGATGGTATGAGGAGGAATCTGTTGCGGATTTTGATACATTGCACAAACAGCCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAATTTACACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGTTGTCAGTCTAGGATAGAGGCTGGAGATGAAACTGTTGCAAAATTTATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACATGGAATGAGTTGAGCTTAGAGGTCTCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGACACGCATTGAGTGTTCTCCAACGTTGCGGTTGTTCGAGTGTTCCAGCTCAATATATCATAAAGAGGTGGACCAAAGATGCCAAAATTAGGGAACCAATAGCAGATAGTACAAGAAGGATACAAACTAGGGTTCAACGCTATAATGATTTGTGCAAACGAGCTATTGAGTTGAGTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGCTCTCCGTGCACTTGTCGATAGCCTGAAGAACTGTGTACTTGTAAATAACGCTAACGACAATGGTGCAGAAACCGGGAACAGTGGTTGTAGTCTTCGTGAAGCAGAAGAAAATCAGGGTACCCTTGCTTTGAAACCAAGTAAGAAGAGGAACACAACTCGGAAAAGAAAGGTGCAACAAGAGCAGAATCCTGTACTTGTCGACACTCAAGATAGCCTGCAGCAAATGGATAATCTTACCTCGGATGCAATGACCCTTAATGGATATTACGGTACTCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACACAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTCGGAACACAGCAAAGCATTCATGGGATGGGAGGAGCACAGTTGGAATATCGTCCGACAACCACTTTTGGATATGGTCTTCAGGATGAGCCTGATCAACACTTCCACAGCAATAATACAAGAAATACTTAG 2394 0.4211 MSMLSLRTELAKRHIIIGAYNTVEACDWFGAGVLAFSGSFSNFFAGNTIVFKDDILNKIDKISERELTEEESGPNAMSCGVGNSWKDKYITHALRRRFNLSHSRFSPTRGSTSHFRTRSQLVILPRFLSEWLQSDYSLDCGRCLEWNDGSAVSGGMGDAVNEEDCRGSALVASPKRDIAFFEGDKDFEPPNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSSSSRRPSVKKTDCKACMHVKKKQDGKWIIHEFIKDHNHELLPALAYHFRIHRNVKLADKNNMDILHAVSERTRKMFVEMSRQSGGCQNIGSLASDMNYQFDRGQYLDETKPTFVWLLKTWLRAMGGQVPKVIVTDQDKALKEAIEEVFPNAQHCFSLWHILEKIPENLSFVIKQYKNFLPKFNNCIFKSWTDEEFDMRWYEEESVADFDTLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRIEAGDETVAKFIVQDYEKDEEFLVTWNELSLEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPAQYIIKRWTKDAKIREPIADSTRRIQTRVQRYNDLCKRAIELSEEGSLSEESYNVALRALVDSLKNCVLVNNANDNGAETGNSGCSLREAEENQGTLALKPSKKRNTTRKRKVQQEQNPVLVDTQDSLQQMDNLTSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQHSMQGLGPLNSMAPSHDGFFGTQQSIHGMGGAQLEYRPTTTFGYGLQDEPDQHFHSNNTRNT* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4940 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 355 448 IPR031052 GO:0006355
Psa6g4940 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 448 711 IPR031052 GO:0006355
Psa6g4940 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 159 350 IPR031052 GO:0006355
Psa6g4940 797 Pfam MULE transposase domain 355 410 IPR018289 -
Psa6g4940 797 Pfam FAR1 DNA-binding domain 203 290 IPR004330 -
Psa6g4940 797 Pfam SWIM zinc finger 529 557 IPR007527 GO:0008270
Psa6g4940 797 SMART 26again6 533 560 IPR006564 GO:0008270
Psa6g4940 797 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 448 711 - -
Psa6g4940 797 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 355 448 - -
Psa6g4940 797 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 159 350 - -
Psa6g4940 797 ProSiteProfiles Zinc finger SWIM-type profile. 522 558 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4940 Psa-Chr6 430715125 430719735 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa6g4940 FAR1 9.4e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4940 - - gmx:100814153 594.734