Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4935 ATGACGAGCGCTTCAGAACTATTCCACAGCAGGAGGCACCGATTAGGACGAAATGATCTCGATTCATCTTTCCACTCTTCACCTTCTCCTGATTTCCATAACCACCGCTTTCACGACTCCGACGACGATGATTCTCTCCGTATCCGCCGTCACTTCAACGTCCGCCGCATCCGCCACCCGGAGCGTGCATCGGATAGATTTGATGCGAGGTTTCGTCGGTCTCTGTTTCATGATAACTTTGATTCTGGAGAAAGTGTGAGAGGTACTCCGAGTGTGAATGGCGGTAACAGATTACCTGTAGGTGTGAGGCTTGCGCGAGAAAGACTCCTTCAGAGGTTGAGAGGAGAGCCTGTAGATAGAAGCAGGCAATATGATAGAGATCCAATCAATGAGGATCAAGAAAGTGAGTTATCAATTGAACTTCCAAGCGAGGACTCTTTAGTTACTGACTTGACTTCTCAAATGGCAAGATTCCAGCTCTTGCCAGAAACATCCTCAAAGCCACCGGGACTCACTCAGGAGGCCCTGGACTGTTTGCATCTTGAAGTTTTTAGCAGCAGCGGTATGGAATCCGAATCCAGGATACTGATAGATTGTGGGATATGCTTGGAATCTTTCACTGATGGAGATAAACTAATTCATTTGCAATGTGGACATAAATTTCACTCTGTTTGTTTGGATCCTTGGATACGCAGTTGTGGAGACTGCCCATACTGTCGCCGATGTATAGTTGTAAGTTAG 741 0.4669 MTSASELFHSRRHRLGRNDLDSSFHSSPSPDFHNHRFHDSDDDDSLRIRRHFNVRRIRHPERASDRFDARFRRSLFHDNFDSGESVRGTPSVNGGNRLPVGVRLARERLLQRLRGEPVDRSRQYDRDPINEDQESELSIELPSEDSLVTDLTSQMARFQLLPETSSKPPGLTQEALDCLHLEVFSSSGMESESRILIDCGICLESFTDGDKLIHLQCGHKFHSVCLDPWIRSCGDCPYCRRCIVVS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4935 246 PANTHER SI:CH211-59O9.10 1 245 - -
Psa6g4935 246 CDD RING-H2_PA-TM-RING 198 240 - -
Psa6g4935 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 244 IPR013083 -
Psa6g4935 246 MobiDBLite consensus disorder prediction 116 133 - -
Psa6g4935 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 245 - -
Psa6g4935 246 SUPERFAMILY RING/U-box 198 244 - -
Psa6g4935 246 Pfam Ring finger domain 198 240 IPR001841 -
Psa6g4935 246 MobiDBLite consensus disorder prediction 116 137 - -
Psa6g4935 246 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Psa6g4935 246 MobiDBLite consensus disorder prediction 19 40 - -
Psa6g4935 246 SMART ring_2 199 239 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4935 1 244 C3H Transcription Factor Family AT1G49850 41.699 7.64e-44 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4935 - - gmx:100814695 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4935 6 430387700 430390716 Psa6g4935 6 430387700 430390716 ECH