Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4925 ATGAGTTGCAACGGTTGTCGTGTCCTTCGAAAGGGATGCAGCGAAGATTGCATGTTACGAGATTCTCTAACATGGATACAAAACCCACAAGCACAGGGTAACGCCACTCTCTTCGTCGCCAAATTCTTCGGCCGTGCTACACTCATGTCTTCCCTATCTTCGGTTCCTCCCAACCAAAGATCTGGTTTGTTCCAGTCACTTATGTATGAAGCTGTTGGAAGAACTATAAATCCAGTGAATGGAGCAGTGGGGCTTTTGTGGACTGGGAGGTGGCGGTTTTGCCAACTGGGCGTCGAGCAAGTTTTGAGAGGCAACGGCGGCGCGTTGACACCACTGCCGGATCATGAGAGTACTGATAGTGATCGTCATCAATATCACCGAGAGCAACAAGTAATGATCGAAAAACAGAATTATAATGAAGAAGCAAACAAGACACAGTCCGAGGAATCGGAGTCGTCGACGTTGGGAAGTAGAACAGGATCCGAGGATTATTCATATGTTTATGCTAATTCTCAAATTCAAACTCAAACCAACCAACTACTTACACTGTTCTTATGA 558 0.4588 MSCNGCRVLRKGCSEDCMLRDSLTWIQNPQAQGNATLFVAKFFGRATLMSSLSSVPPNQRSGLFQSLMYEAVGRTINPVNGAVGLLWTGRWRFCQLGVEQVLRGNGGALTPLPDHESTDSDRHQYHREQQVMIEKQNYNEEANKTQSEESESSTLGSRTGSEDYSYVYANSQIQTQTNQLLTLFL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4925 185 PANTHER LOB DOMAIN PROTEIN 1 185 - -
Psa6g4925 185 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Psa6g4925 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 185 - -
Psa6g4925 185 Coils Coil 128 148 - -
Psa6g4925 185 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4925 Psa-Chr6 429871212 429872470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4925 1 114 AS2 family AT3G49940 69.298 1.93e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa6g4925 LOB 1.1e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4925 6 429871212 429872470 Psa6g4925 6 429871212 429872470 ECH