Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4922 ATGGAACCTACCCAACTGATATATGAAGAATGGGATTCTCTTAGTGGACAGTTCACAGCTGAGGAAGCTGATTTCATGACTCAGTTGCTTGATGGCAATACCAACTGTTCTTATTTTCCTTCAAATGTTGCAAATGCTAATTCTATGTGTTTCTCCCAAGTGAGTAGCACAGACACTGCTAATAGTGGCATCTACTTCTCTGATCATGCAATAGACAATGATTCCTTGTCCATGTTTTATAGTCCACAATATTTGGACGATAATTTAAGCAAACAGATGAATTATGAAAGCATTGCTCATGAAGGGTCATGTTTAGAGCCAGTGAAATTGGTTCTTGCTCCTGACAACAATTTGCAAGCTAAGAGGGAGCATGAAATGATGTTTGTTTCAGAAGAGGATAGAACCGAAAACATGGAGAATCCTGCAAAAAGATTTAGGAGCTCAAATGCTTCCATGGAGCTAAATGAGGGAACATGTCATCAAGTGTCGAATTTATGTAGAAAATCAAGAGCAAGAAATGGTCCTGCCACTGATTCTCAGAGCATATATGCTAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACACTTGTCCCTAATGGAACCAAAGTGGACATTAGCACCATGCTTGAGGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTCCTAAGCTCTAATGACATGTGGATGTATGCTCCAATAGCTTACAATGGAATCAACATTGGATTGGACCTCACCTTTTCTTCTCTAACTAATTAA 783 0.3857 MEPTQLIYEEWDSLSGQFTAEEADFMTQLLDGNTNCSYFPSNVANANSMCFSQVSSTDTANSGIYFSDHAIDNDSLSMFYSPQYLDDNLSKQMNYESIAHEGSCLEPVKLVLAPDNNLQAKREHEMMFVSEEDRTENMENPAKRFRSSNASMELNEGTCHQVSNLCRKSRARNGPATDSQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSNDMWMYAPIAYNGINIGLDLTFSSLTN* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4922 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Psa6g4922 260 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 118 258 - -
Psa6g4922 260 Gene3D - 177 240 IPR036638 GO:0046983
Psa6g4922 260 SMART finulus 181 230 IPR011598 GO:0046983
Psa6g4922 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 241 IPR036638 GO:0046983
Psa6g4922 260 Pfam Helix-loop-helix DNA-binding domain 185 225 IPR011598 GO:0046983
Psa6g4922 260 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 118 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4922 Psa-Chr6 429555516 429557056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4922 164 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 70.642 2.81e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g4922 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4922 - - gmx:100816788 228.794