Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4919 ATGGCTTTAGAGTTACAAGCTATGAATTCTTCTCCAACAACACAAGCTCCTATTCCATTCCCAATCTTCAAAAACCAATCAGAGAATCAAAAGAATCTTGACCAGCACGAACACGACTCTTTGGTTAAGAAGAAACGATCTAAACGACCGCGGATTGGGAATCCACCCACCGAAGAAGAATATCTCGCTCTTTGTCTCATCATGCTCGCACAAGGGAACACCAACAACACCATCAACAAGAGTCGATCTCAACAACAAGAATCATCATCTTCACAATCGCAATCACAGCAACAACAACAACATCAAAACTCTCCGCCACCACCACCACCGCCTGCGAAGCTGAATCACAGGTGCACCGTCTGCAACAAAGCTTTCCCTTCTTATCAAGCACTCGGTGGCCACAAAGCCAGCCATCGCAAATCCTCATTAGAAAACCAATCCACCGCCGTCAACGACAGCGTCAACGTCTCAACTGTCACCACCACCGGAAAGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACTGGTCAAGCTCTTGGTGGACACAAACGCTGCCACTACGAAGGAGGTAACAACAACAGCAACAACAACAATCACAATATCAGTAACAGCAACGCCAACGCTAATAACAGCAGTAACATCACAATCTCCGACGTCACCGCCGCGTCCTCTTCCATCAGCCACCGTGGCTTTGACCTCAACCTACCCGCACCTCTCACTGAATTCTGGTCTCCGGTAGAATTCACCGCTGGTGATTCCAAGAAGAACAAAATTAACGTCAATCTCGCCGGAAACGGATCTTGTTTTCCTTTTCTTTGTTTGGTTCTCAATAGTATTATTTATTTTCTCCAGGAGAAGAAACTTATGCATAACATCCGTCAATACGAGGTTCCCTTGCAAAAGTACATGGCCATGATGGACCTTCAGGAGAGGAATGAAAGACTGTTTTATAAACTTCTTATCGACAATGTTGAAGAATTACTCCCGATTGTATATACTCCGGTTGTTGGCGAGGCTTGCCAGAAATATGGGAGCATATTCAAGCGTCCTCAGGGTCTTTACATTAGTTTGAAAGAAAAGGGTAAAATTCTTGAGGTTTTGAAAAACTGGCCAGAAAGGAGTATTCAGGTTATTGTTGTAACTGACGGTGAACGGATTTTGGGACTCGGAGATCTCGGATGCCAGGGTATGGGAATTCCTGTTGGTAAATTGGCTTTGTACTCAGCACTAGGAGGAGTTCGTCCTTCAGCATGTTTGCCGATTACGATTGACGTGGGGACAAATAATGAGAAATTACTGAATGATGAGTTTTACATTGGCCTTAGACAAAAGAGGGCAACTGGGAAGAATTCACCGCTGGTGATTCCAAGAAGAACAAAATTAACGTCAATCTCGCCGGAAACGGTGAACAAGAGGCGGAAAGTCCGTACGTAA 1440 0.4507 MALELQAMNSSPTTQAPIPFPIFKNQSENQKNLDQHEHDSLVKKKRSKRPRIGNPPTEEEYLALCLIMLAQGNTNNTINKSRSQQQESSSSQSQSQQQQQHQNSPPPPPPPAKLNHRCTVCNKAFPSYQALGGHKASHRKSSLENQSTAVNDSVNVSTVTTTGKMHECSICHKSFPTGQALGGHKRCHYEGGNNNSNNNNHNISNSNANANNSSNITISDVTAASSSISHRGFDLNLPAPLTEFWSPVEFTAGDSKKNKINVNLAGNGSCFPFLCLVLNSIIYFLQEKKLMHNIRQYEVPLQKYMAMMDLQERNERLFYKLLIDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGKNSPLVIPRRTKLTSISPETVNKRRKVRT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4919 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Psa6g4919 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Psa6g4919 479 Pfam Malic enzyme, N-terminal domain 311 452 IPR012301 GO:0004471
Psa6g4919 479 SUPERFAMILY beta-beta-alpha zinc fingers 116 188 IPR036236 -
Psa6g4919 479 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Psa6g4919 479 MobiDBLite consensus disorder prediction 79 112 - -
Psa6g4919 479 Gene3D - 277 462 IPR037062 GO:0004471
Psa6g4919 479 SMART malic_2 311 478 IPR012301 GO:0004471
Psa6g4919 479 MobiDBLite consensus disorder prediction 1 56 - -
Psa6g4919 479 Gene3D Classic Zinc Finger 113 188 - -
Psa6g4919 479 PANTHER MALIC ENZYME 285 452 - -
Psa6g4919 479 SMART c2h2final6 166 188 IPR013087 -
Psa6g4919 479 SMART c2h2final6 116 138 IPR013087 -
Psa6g4919 479 PANTHER MALIC ENZYME-RELATED 285 452 - -
Psa6g4919 479 PRINTS Malic enzyme signature 317 341 IPR001891 GO:0004470|GO:0004471
Psa6g4919 479 PRINTS Malic enzyme signature 377 406 IPR001891 GO:0004470|GO:0004471
Psa6g4919 479 PRINTS Malic enzyme signature 413 435 IPR001891 GO:0004470|GO:0004471
Psa6g4919 479 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 286 453 IPR046346 -
Psa6g4919 479 Pfam C2H2-type zinc finger 166 189 - -
Psa6g4919 479 Pfam C2H2-type zinc finger 116 140 - -
Psa6g4919 479 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Psa6g4919 479 MobiDBLite consensus disorder prediction 79 101 - -
Psa6g4919 479 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4919 Psa-Chr6 429378564 429380878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4919 3 244 C2H2 Transcription Factor Family AT1G27730 41.434 2.21e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g4919 malic 5.5e-61 CL0603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4919 K00029 - twl:120005635 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4919 6 429378564 429380878 Psa6g4919 6 429378564 429380878 ECH