Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4915 ATGGAACCCACCCAATTGATTTCTCAAGAGTGGGATTCTCTTAGTGGACAGTACACAGCTGAAGAAGCTGATTTCATGACTCAGTTCCTTGGTGGAAACTATTCATGTTTTCCTTCTAATGCTAACTTTATGTGTTTCCCCCAAGGGAGTAGCTCAAGCACAGATCATAGTGATGATATCTTTTCTACAGTCACAGCAAGTAATGGACCATACTTATGTGATCCGGCAACTCACATTGATTCATTGTCCATGTTTTTTAGTCCACAATATTTGGATGATAGCTTAATCAAACAGATAAACTATGAAGGCATTGATCATGAAAGGTCATGTTTAGAGCCAGGGAAACTGGCTCATGCTCCTGACAACAATTTGCAAGCTAAGAGGGAGCATGAAATGATGTTTGTTTCAGAAGAGGATAGAACCGAAAACATGGAGAATCCTGCAAAAAGATTTAGGAGCTCAAATGCTTCCATGGAGCTAAATGAGGGAACATGTCATGAAGTGTCGAATTTATGTAGAAAATCAAGAGCAAGAAATGGTCCTGCAACTGATTCTCAAAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGATTGAGAATCTTGCAGACCCTTGTCCCTAATGGAACCAAGGTGGACATTAGCACCATGCTTGAGGAAGCTGTTCAATATGTCAAGTTTTTGCAGCTTCAAATTAAGGTTCTGAGTTCTGATGATATGTGGATGTATGCTCCAATAGCTTACAATGGAATCAACATTGGATTAGACCTCAGCTTTTCTTAA 789 0.3916 MEPTQLISQEWDSLSGQYTAEEADFMTQFLGGNYSCFPSNANFMCFPQGSSSSTDHSDDIFSTVTASNGPYLCDPATHIDSLSMFFSPQYLDDSLIKQINYEGIDHERSCLEPGKLAHAPDNNLQAKREHEMMFVSEEDRTENMENPAKRFRSSNASMELNEGTCHEVSNLCRKSRARNGPATDSQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGINIGLDLSFS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4915 262 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 122 260 - -
Psa6g4915 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Psa6g4915 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 247 IPR036638 GO:0046983
Psa6g4915 262 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 122 260 - -
Psa6g4915 262 SMART finulus 187 236 IPR011598 GO:0046983
Psa6g4915 262 Gene3D - 179 239 IPR036638 GO:0046983
Psa6g4915 262 Pfam Helix-loop-helix DNA-binding domain 191 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4915 Psa-Chr6 428549277 428550620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4915 170 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 81.818 2.60e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g4915 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4915 - - gmx:100816788 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4915 6 428549277 428550620 Psa6g4915 6 428549277 428550620 ECH