Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4914 ATGGATCCTTCAGAGCAAAGTTGTGAACAATGGAGTTCACTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGTCAGTTACTTGATAACTGTCAAGTACCTGAACACAGTTATGGAAATTTCAATTTTGAAGTTCCATCTACATTATGGCCTGTACATGATGACTCCACAATAGTGAGCATGAATAACAGTGACCATTTTCCTCAAAATGTTGATCATAGTAACACCAATTTTTTGAGTTTTTTACAAGGAAATAACATCATATCTGATACAAATGATGGTTACAACTGTTTGAATGATGATCAAGTAGCAAACATTGGCTACATTTCCATGCTGAATGGAGATTTCGGCGCTTATAGTGTTCGACGGAATGATAGTGCACAGATAACTGAAAATAACACTGATGAAGAGTTTTGTCAAGAGGTTATTGGTGACAAGAATTTTCAGGCTCATGTGGAATGTGAAGAGGTACTGGTTTCTGAATCAGTGGAAGATGGTATTAACAACAACTTGGAAAAAACAGGAAAAAGATCTAGGAGTTCAATGAAGGTTCAAAAGAATAAGAAAAATATCAAATCTAGGAAGAAACCGAAGTCGGCTTTCGTAAGCAACCCTGAAGAGGATGAAAGGCTGGATCTTCAGGAGCCGATTTTGAGCTCCGAGGAGGATGACTTCAATCCTTCTCATAAGCTACATGAAGAAGGGTCTTCAATCGTAAACCGGAACGATTCAGCATCTGTGAAGTTAAAAGGAAAATCAAGATGTGATAGAGGTTCTTCCACTGATCCACAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATTCTACAAAGCCTGGTCCCTAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCTGTGCTATATGTGAAGTTTTTGCAGGTCCAAATTAAGCTTCTTAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGACTAAGCCTCAACATTACACCAACCAAACTACCATAA 1044 0.3812 MDPSEQSCEQWSSLSGFYTAEEADFMGQLLDNCQVPEHSYGNFNFEVPSTLWPVHDDSTIVSMNNSDHFPQNVDHSNTNFLSFLQGNNIISDTNDGYNCLNDDQVANIGYISMLNGDFGAYSVRRNDSAQITENNTDEEFCQEVIGDKNFQAHVECEEVLVSESVEDGINNNLEKTGKRSRSSMKVQKNKKNIKSRKKPKSAFVSNPEEDERLDLQEPILSSEEDDFNPSHKLHEEGSSIVNRNDSASVKLKGKSRCDRGSSTDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVLYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLSLNITPTKLP* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4914 347 CDD bHLH_AtIND_like 262 324 - -
Psa6g4914 347 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
Psa6g4914 347 PANTHER TRANSCRIPTION FACTOR BHLH54 8 343 - -
Psa6g4914 347 MobiDBLite consensus disorder prediction 171 270 - -
Psa6g4914 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 343 - -
Psa6g4914 347 SMART finulus 267 316 IPR011598 GO:0046983
Psa6g4914 347 MobiDBLite consensus disorder prediction 201 239 - -
Psa6g4914 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 327 IPR036638 GO:0046983
Psa6g4914 347 Gene3D - 269 322 IPR036638 GO:0046983
Psa6g4914 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Psa6g4914 347 MobiDBLite consensus disorder prediction 182 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4914 Psa-Chr6 428438153 428440166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4914 10 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 35.083 1.79e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g4914 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4914 - - gmx:100817334 385.185