Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4885 ATGCTAAGCAACTACTGTTCTATCGATGGGGTGCTCTATTGCAGACCACACTATGATCAACTCTACAAGAGAACCGGAAGCCTGGACAAAAGCTTTGAAGGAACGCCCAAAATTCAGAAACCAGAAAGACCAGCTGAGAATGAGAACGCCAAAACACTTGCAAAAGCGTTTGGGGGGACAAAAGACATATGCATGTGTTGCAAAAAGACAGTGTATCCCACGGAGAAGGTTACCGTTAACGGGACTCCCTATCACAAGGGCTGCTTCAAATGTATCTATGGAGGTTGCACTATAAGCTCATCAAATTTTGTTACACATGAAACAAAGCTTTACTGCAAACATCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAACTTGAGACTACTGATGTTTCTGCTTAA 411 0.4185 MLSNYCSIDGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERPAENENAKTLAKAFGGTKDICMCCKKTVYPTEKVTVNGTPYHKGCFKCIYGGCTISSSNFVTHETKLYCKHHHIQLFKEKGNYSQLETTDVSA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4885 136 ProSiteProfiles LIM domain profile. 62 122 IPR001781 -
Psa6g4885 136 Pfam LIM domain 64 119 IPR001781 -
Psa6g4885 136 PANTHER OS06G0237300 PROTEIN 2 132 IPR045268 GO:0051015
Psa6g4885 136 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 2 132 - -
Psa6g4885 136 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 90 129 - -
Psa6g4885 136 SMART lim_4 63 115 IPR001781 -
Psa6g4885 136 Gene3D Cysteine Rich Protein 59 128 - -
Psa6g4885 136 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 57 89 - -
Psa6g4885 136 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4885 Psa-Chr6 427071603 427072513 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g4885 LIM 3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4885 K09377 - gmx:100306027 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4885 6 427071603 427072513 Psa6g4885 6 427071603 427072513 ECH