Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4881 ATGTCAATGGGGAGGAAAGGTCATGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGAGAGCAACCTGCAAGTGACTTTCTCGAAGCGTCGCAGTGGGCTCTTCAAGAAAGCCAATGAACTTTACACACTCTGTGATGCAGATATTGCTCTCATTGTATTGTCACCTGGTGGGAAGAAGTGTGGTGATGAGTTTAGCCATTTGTGCAAGACAACTGAGGCTCAATTTTGGTGGACTTGTTCCATTTATAGAATGAATAGGGCTCAACTTGAATTATTCAAGAAGGCTTTGGAGGAACTTAAGAAACTTGTTGCACAAAATGTTAGGCTTGTAATTCAGGGTGCACCTACCCAAACTATTCAATTTCAAAACTCTATGGTACAACCTCATTCTTTTGATTTCAATAATATGGGGGGAAGTGGAAGATATGAACATTCTGGATTGTTTTGA 453 0.4018 MSMGRKGHGRQKIEMKKMSNESNLQVTFSKRRSGLFKKANELYTLCDADIALIVLSPGGKKCGDEFSHLCKTTEAQFWWTCSIYRMNRAQLELFKKALEELKKLVAQNVRLVIQGAPTQTIQFQNSMVQPHSFDFNNMGGSGRYEHSGLF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4881 150 PANTHER MADS BOX PROTEIN 8 60 - -
Psa6g4881 150 SMART madsneu2 8 69 IPR002100 GO:0003677|GO:0046983
Psa6g4881 150 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 60 - -
Psa6g4881 150 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 60 IPR002100 GO:0003677|GO:0046983
Psa6g4881 150 Gene3D - 20 76 IPR036879 GO:0003677|GO:0046983
Psa6g4881 150 ProSiteProfiles MADS-box domain profile. 8 60 IPR002100 GO:0003677|GO:0046983
Psa6g4881 150 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g4881 150 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g4881 150 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa6g4881 150 SUPERFAMILY SRF-like 9 62 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4881 Psa-Chr6 426699632 426700255 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4881 3 60 Type I MADS-box Gene Family AT1G01530 75.862 3.25e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4881 SRF-TF 2.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4881 - - gmx:100780445 112.079