Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4850 ATGTCAACCGGAAGGAAAGGTCGTGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAGAGCAATATGCAAGTGACTTTCTCAAAGCGTCGTGGTGGGCTTTTCAAGAAAGCCAGTGAGCTTAGCACACTTTGTGGTGCAGATATGGCTCTTGTTGTATTCTCACCTGGTGAGAAGGTGTTTTCCTTTGGTCACCCACATGTTGATACAATCATAGATCGTTATCTATCACGGGTCCCACCCCAAATTAATGGCACCATGCAATTTCTTGAGGCTCAACGTAGCGCAAACGTGCGTGAGCTCAATAATCACCTGACAGAAATTAACAGTATGTTGGACATTGAGAAGAAATGTGGTGATGAGTTAAGTAATTTGCGAAAGGCGGCCGAGGCTCAGTTTTGGTGGGCGTGTCCCATTGATGGAATGAATAGGGCTCAAGTTGTACTATTCAAGAAGGCTTTAGAGGAACTTAAGAAACTTGTGGTGATGAGTTAA 498 0.4398 MSTGRKGRGRQKIEMKKMSNESNMQVTFSKRRGGLFKKASELSTLCGADMALVVFSPGEKVFSFGHPHVDTIIDRYLSRVPPQINGTMQFLEAQRSANVRELNNHLTEINSMLDIEKKCGDELSNLRKAAEAQFWWACPIDGMNRAQVVLFKKALEELKKLVVMS* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4850 165 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Psa6g4850 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa6g4850 165 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa6g4850 165 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Psa6g4850 165 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 163 - -
Psa6g4850 165 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa6g4850 165 Gene3D - 87 163 - -
Psa6g4850 165 PANTHER MADS BOX PROTEIN 7 163 - -
Psa6g4850 165 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g4850 165 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g4850 165 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa6g4850 165 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4850 Psa-Chr6 421893099 421893596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4850 5 164 Type I MADS-box Gene Family AT5G60440 55.828 5.87e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4850 SRF-TF 7.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4850 - - mtr:MTR_1g106070 248.825