Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4848 ATGAATAACTCAGTTAACCAAAAAAAGAAAACCATGGGACGCAAGAAGATCGAAATCAAGAAAGTCGAAAAAGAAAGCAACAAACAAGTCACATTCTCCAAAAGAAGATCCGGTTTATTCAAAAAAGCTTGCGAACTTTGCGTCTTGAGCGATGTTAATCTCGCCATCATTGTGTTCTCTCCTGCTGATAAACTATTCTGCTGCAGTCGACCCAACACCGACGCGATCCTCAAGAGTTACATCAATGGAACCACCGAGTTTGAGGATCAGAAGTCGACGGAACATTCTTCGATCTGCGAGGAGTATAATAGAGAATATGAAGAGGCACTAAAGATGTTGGAAATGGAAAAGAAGAAACTTGCGGATATTGAGCATTTGGCTAGGGATTGGAATAACGGTGGATGGTGGAATGATTCTATAGATGATATGGGTAGTGAACAGCTTCAGCAATTTATGATGTCCATTTTTGAGTTGAGGAAGAAGCTTGCGGAGAAAGAACATGAACATCTCATGATGTTTTCTATGTAA 528 0.4015 MNNSVNQKKKTMGRKKIEIKKVEKESNKQVTFSKRRSGLFKKACELCVLSDVNLAIIVFSPADKLFCCSRPNTDAILKSYINGTTEFEDQKSTEHSSICEEYNREYEEALKMLEMEKKKLADIEHLARDWNNGGWWNDSIDDMGSEQLQQFMMSIFELRKKLAEKEHEHLMMFSM* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4848 175 PANTHER MADS BOX PROTEIN 9 172 - -
Psa6g4848 175 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Psa6g4848 175 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Psa6g4848 175 Coils Coil 99 126 - -
Psa6g4848 175 Coils Coil 5 25 - -
Psa6g4848 175 Gene3D - 24 109 IPR036879 GO:0003677|GO:0046983
Psa6g4848 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 172 - -
Psa6g4848 175 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Psa6g4848 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 66 IPR002100 GO:0003677|GO:0046983
Psa6g4848 175 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Psa6g4848 175 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Psa6g4848 175 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4848 Psa-Chr6 421795793 421796905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4848 9 160 Type I MADS-box Gene Family AT5G60440 40.252 6.37e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4848 SRF-TF 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4848 - - cam:101502875 207.994