Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4847 ATGAACACGGTTGATCAAAGAAAGAAAATCACATGGCGCAAGAAGAAGATCGATATATGGAAAGTTGAAAAACAATCCAACAAACTTGTGACATTCTCAAAAAGAAGACAAGGTTTATTCAAAAAAGCAACTGAACTTTGCATCTTATGTGATGTTAACATGGCCATGATTGTGTCTTCTCCTGCCGATAAACTATTCTCTTTCGGTCGACCCGACACCGGCACAGTCCTCAACAACTACTTCAGTGGAACCACTGAGTTTGAAGATGAAAAGTCAATGGAATCAAATTATGAGTATAATAGAGAATATGAAGAGACACTAAAGATGTTGGAATTGGAAAAGAAGAAACTTTTAGAAAGTGAAAAATTAGCTAAGGCTAGAGGTGAATGGTGGAATGATTCTATTGATGATATGAATTGTGAAGAACTTGAACAATTTATGGTGTCTATTTATGAGTTTAGGAATAAGCTTGTTGAAAAGGAACATGAACATCTCAAGATGTTTTCCATGAAGTAG 516 0.3527 MNTVDQRKKITWRKKKIDIWKVEKQSNKLVTFSKRRQGLFKKATELCILCDVNMAMIVSSPADKLFSFGRPDTGTVLNNYFSGTTEFEDEKSMESNYEYNREYEETLKMLELEKKKLLESEKLAKARGEWWNDSIDDMNCEELEQFMVSIYEFRNKLVEKEHEHLKMFSMK* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4847 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Psa6g4847 171 Gene3D - 30 107 IPR036879 GO:0003677|GO:0046983
Psa6g4847 171 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
Psa6g4847 171 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Psa6g4847 171 PANTHER MADS BOX PROTEIN 9 166 - -
Psa6g4847 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 166 - -
Psa6g4847 171 Coils Coil 100 127 - -
Psa6g4847 171 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Psa6g4847 171 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Psa6g4847 171 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Psa6g4847 171 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4847 Psa-Chr6 421775267 421775782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4847 14 158 Type I MADS-box Gene Family AT2G24840 36.129 2.34e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4847 SRF-TF 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4847 - - cam:101502875 167.933