Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4846 ATGGCAATTAATTCTTGCAAGTTATTATTTTCCTTTTATTCTTTTCTGCTTCTTCTAATTATTATAGTATCTCAAGCCAAATTTTTGTACAACTCTTGTATAAACGATACTGGCTACTACACAGCCAACAGCACATATAGAAAAAACTTGAACACCCTTTTGTCCAATCTCACTTCCAACACAGAAATCAACTACGGTTTCTACAATTTTACTTATGGCCAAAACAACGACAGAGTAAACGCCATTGGCCTCTGCCGAGGAGATGTTAAACCAGATGTTTGCCGCAGTTGTCTCAACCATTCAAGAGTTCTTCTCACAAAGCTTTGTCCAAACCAAAAAGAAGCTATTGGATGGTATGATCTCTGCATGTTACGCTACTCGAGCCGATCGATATTCAGTAAAATGGAAGGTTCACCTACACAAGGTTTTTCAAACCCAAACAGTGTAAGAGAAGTGGATGAATTTAATGGAGTTCTTTCAAGCTTGATGATGAAACTGAAAGAAAAAGCAACATCAAGTGACAATTCTCGTCTTAATGTTTGTTTAGATAATGCGATCTCAGAAATTCCAAGTTGTTGTGATAAAAAGATTGGTGGTAAAGTCATCAAACCAAGTTGTAATATTAGATATGAATCCTCTCTCTTCTACGATCCTACACCTCTAATAGACCAGGATGAAAACTTCCCATCAGAAGAAAAAAATAAATCATCGCATACTACCATCGCCATAGTTGTGCCTACTGTTGTTGTTTCTGCTGCTTTGCTAAGTTTCATTTGCATATGCTTAAGAAGAAACTGCCACAGTAAAGTAGAGATAGATCTCAAAGAAATAAAAGATGATAGTGATGACATCGAATCATTACAATTCAACTTTGACACAATACAAGAGGCTACAAGCAACTTTTCTGAAGCTAATAAACTCGGACATGGTGGATTTGGAGTTGTTTATCAGGGTACACTCTCCAATGGACAAGTGATTGCAGTCAAAAGGTTGTCCATAAATTCTGGACAAGGAGAGATTGAATTTAAGAATGAAGTGCTTTTAGTGGCTAAACTTCAACATAGAAATTTAGTTAAATTGCTTGGTTTTTGTCTTGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTTATATTTGATCCAATAAAGAAAACACAATTAGATTCGGAAAAGCGCTACCAAATCATTCGAGGCATTGTTAAAGGTATTCTTTACCTTCACGAGGATTCTCGACTTCGTATTATACATCGTGATCTCAAAGCAAGTAATATTCTGTTGGACGAAAAAGTGAATCCTAAAATATCAGATTTTGGTATAATCAGACTTCTTCTTATGGATCAAACTCAAGTAAATACAGATAAAATCGTTGAAACATATGGATATATGGCTCCTGAATAA 1422 0.353 MAINSCKLLFSFYSFLLLLIIIVSQAKFLYNSCINDTGYYTANSTYRKNLNTLLSNLTSNTEINYGFYNFTYGQNNDRVNAIGLCRGDVKPDVCRSCLNHSRVLLTKLCPNQKEAIGWYDLCMLRYSSRSIFSKMEGSPTQGFSNPNSVREVDEFNGVLSSLMMKLKEKATSSDNSRLNVCLDNAISEIPSCCDKKIGGKVIKPSCNIRYESSLFYDPTPLIDQDENFPSEEKNKSSHTTIAIVVPTVVVSAALLSFICICLRRNCHSKVEIDLKEIKDDSDDIESLQFNFDTIQEATSNFSEANKLGHGGFGVVYQGTLSNGQVIAVKRLSINSGQGEIEFKNEVLLVAKLQHRNLVKLLGFCLEGRERLLVYEFVPNKSLDYFIFDPIKKTQLDSEKRYQIIRGIVKGILYLHEDSRLRIIHRDLKASNILLDEKVNPKISDFGIIRLLLMDQTQVNTDKIVETYGYMAPE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4846 473 Gene3D - 176 215 IPR038408 -
Psa6g4846 473 Gene3D - 25 130 IPR038408 -
Psa6g4846 473 Pfam Protein kinase domain 302 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4846 473 SMART serkin_6 301 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4846 473 SUPERFAMILY Protein kinase-like (PK-like) 285 473 IPR011009 -
Psa6g4846 473 Gene3D Transferase(Phosphotransferase) domain 1 377 473 - -
Psa6g4846 473 Gene3D Phosphorylase Kinase; domain 1 263 376 - -
Psa6g4846 473 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Psa6g4846 473 ProSiteProfiles Protein kinase domain profile. 301 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4846 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Psa6g4846 473 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Psa6g4846 473 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 177 - -
Psa6g4846 473 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 179 473 - -
Psa6g4846 473 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 179 473 - -
Psa6g4846 473 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 177 - -
Psa6g4846 473 Pfam Salt stress response/antifungal 33 128 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4846 Psa-Chr6 421525072 421534994 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4846 9 473 Receptor kinase-like Gene Family AT4G05200 45.508 6.67e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g4846 Pkinase 1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4846 - - gmx:100791056 533.102