Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4844 ATGGTGATTCTCGTCGTAAGTATGATGCCGATAATGTTAATGAGCCTGCAAATTTTGCAACTATATACGGTTATGTGCTGTGTGTGCCGGATTTGTCTTCGCAACAATGTGTTGATTGCTTGGAAGCAGCGATTTCTGATATTCCAGGTTGTTGTAAGGGAAAGATGGGAGGAAATATTCTTAAACCAAGTTGTCGAATTAGATTCGATCCTTATCGTTTCTATAATCAGACGATTGTGTTGGATTCGAATGCGACGCCTCCTTCACCGTCGCTACAACCACCATCAGAATCTACCAATAACAGTTCTTCACCATCTACAGATATCACTTCTTCAGTTCATCCAATTCCAAAGACATAAACCTCACAAAAATGAACTTTATCTCAACCGACTGAAAATAGGAGAGAGAAACTCCATCAAAGGGAAGAGCAAAATACGAATCATTATCATCTCCATTGCATTGCCAGCTGTTAGTGTGGTTTTGATACTCATTTTTATTTGCATCTATTTAAGATTGAGAAAGCCAAAACAAATGTTTCAAGAAATTAATAGAAAACATGATGATGGAGATGAAGACGAAATTACAATTGTTGAGTCATTGCAATTCAACTTTGATATTATACGGGTTGCTACAAATGATTTCTCGGATTCTAACAAACTTGGACGAGGTGGATTTGGAATTGTTTATAAGGGTAAACTTCCAGATGGACAAATGATTGCTGTTAAAAGATTGTTAGAAGAATCTAACCAAGGAGACGAGGAATTTAAAAATGAAGTATTATTAGTAGCCCGACTTCAACATCGAAATCTAGTTAGACTACTTGGTTTCTGTTTAGAAGGGATGGAAAGGCTGCTTATTTATGAATTTGTTACAAATAAAAGTCTTGATTACTTCATATTTGATCCAATCAGAAAAGCTCAACTGAATTGGGAAAAACGCTATGAAATCATAAAAGGCATTGCCCGAGGACTTCTTTATCTTCATGAAGATTCTCGTTTGCGCATAATACATCGTGATATCAAAGCAAGCAATATTCTGTTAGACAACGAGATGAATCCTAAGATATCTGATTTTGGATTGGCAAGATTGTTTGTTATCGATCAAACTCAAGGACATACAAATAGACCGGCTGGAACCTATGGATATATGGCACCTGAGTATGTAATGCATGGATTATTTTCGGTGAAATCAGATGTTTTTAGTTTTGGAGTACTGATTCTTGAGATTATAAGTGGTCATAAAAATAGTGCAAACATTTGTCATGGAAATGATATAGAGTATCTATTGAGCTTCGCATGGAAAAGCTGGAGAGAGGGGAAATCTACAAACATTATAGATCCATCATTGAAAAACTATTCACCAAATGAAATAATGAGATGCATTCATATTGGTTTGCTTTGTATTCAAGAAGATGCGGCTGATAGACCAACCATGGCAGCTGTTGCACTCATGCTTAATAGTTATTCTCTCAGTCTCACAATACCTTTGAAACCTGCATTCTTTTATGGAAGTAGAACTGGAACTGAAAGCTTGCATGACAAGCAACAATGGGGTGAAAATCAAGATGCAACGACGTCGAATGAATCGATAAACGAGGCTTCGAATACTGATCCATACCCTCGGTAG 1626 0.3672 MVILVVSMMPIMLMSLQILQLYTVMCCVCRICLRNNVLIAWKQRFLIFQVVVRERWEEIFLNQVVELDSILIVSIIRRLCWIRMRRLLHRRYNHHQNLPITVLHHLQISLLQFIQFQRHKPHKNELYLNRLKIGERNSIKGKSKIRIIIISIALPAVSVVLILIFICIYLRLRKPKQMFQEINRKHDDGDEDEITIVESLQFNFDIIRVATNDFSDSNKLGRGGFGIVYKGKLPDGQMIAVKRLLEESNQGDEEFKNEVLLVARLQHRNLVRLLGFCLEGMERLLIYEFVTNKSLDYFIFDPIRKAQLNWEKRYEIIKGIARGLLYLHEDSRLRIIHRDIKASNILLDNEMNPKISDFGLARLFVIDQTQGHTNRPAGTYGYMAPEYVMHGLFSVKSDVFSFGVLILEIISGHKNSANICHGNDIEYLLSFAWKSWREGKSTNIIDPSLKNYSPNEIMRCIHIGLLCIQEDAADRPTMAAVALMLNSYSLSLTIPLKPAFFYGSRTGTESLHDKQQWGENQDATTSNESINEASNTDPYPR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4844 541 MobiDBLite consensus disorder prediction 511 541 - -
Psa6g4844 541 Gene3D Phosphorylase Kinase; domain 1 176 289 - -
Psa6g4844 541 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 127 530 - -
Psa6g4844 541 ProSitePatterns Protein kinases ATP-binding region signature. 220 242 IPR017441 GO:0005524
Psa6g4844 541 ProSiteProfiles Protein kinase domain profile. 214 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4844 541 Pfam Protein tyrosine and serine/threonine kinase 217 482 IPR001245 GO:0004672|GO:0006468
Psa6g4844 541 SUPERFAMILY Protein kinase-like (PK-like) 199 504 IPR011009 -
Psa6g4844 541 Gene3D Transferase(Phosphotransferase) domain 1 290 493 - -
Psa6g4844 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Psa6g4844 541 CDD STKc_IRAK 220 486 - -
Psa6g4844 541 SMART serkin_6 214 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4844 541 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 127 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4844 Psa-Chr6 421503917 421517024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4844 140 500 Receptor kinase-like Gene Family AT4G21410 60.598 1.86e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g4844 PK_Tyr_Ser-Thr 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4844 - - mtr:MTR_5g065130 590.112