Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4843 ATGCCTCTGCTTTCTTTTTCCTTTGTTTGTTATGTGTTTGTTACAACTATATCTCAAGCCAAAGCTGAAGAAGATCCTGTATCATGTGATAACAACAGAGGCAACTACACTGCCAGTAGCACCTACGATAACAACCTTAAAACCCTTATATCCACTTTCTCTTCTCATAAAGTAATTAACTACGGTTTCTACAATTTCTCATATGGCCAAGATCCAGACAAAGCATATGCCATTGGATTGTGTCGTGGAGATCTTGAACCAAATCAGTGTTTTACAAACATAAACAACTCCTTTGCCTATCTCAAACGACAGTGTCCAAATCAAAAAGAGGCAATTGTGTGGGGTGTTGATTTCACTTTATGGTACTCAGATCGTTCAATATTTGGGATAGTAGAAAATTCACCTACACTATATTTGATATATGAAAGAAATGTAAGCGATGTGTATGCATACAACGAAGAACCAGAATATTGTATATCTTACATGGGAAAATATGAAGATGGAGTTGAAGATGATATGACGAATGTTGAGTCATTGAGATTTAACTTTAATGCCACAATAGTTGCTACAAATGGCTTCTCCAATACTAATAAACTTGGACAAGGTGGATTTGGAGTGGTTTATCGGGGTGAACTACCTAATGGACAGATGATTGCAGTTAAAAGGTTGTCAAAAAATTCTACCCAAGGAGATGAGGAATTTAAAAATGAAGTACTATTAGTAGCGAAGCTTCAACATCGAAACTTAGTTAGGTTACTGGGTTTTACTTTAGAAGGAAGAGAAAGACTACTAATTTATGAATATATTTCAAATAAAAGTCTCGATTTCTTCATATTTGATCCCATCAGGAAAGCACAAATGAATTGGGAAATACGTTATAATATCATAAAAGGTATTGCTCGAGGTCTTCTTTATCTTCATGAAGATTCACGCCTACGCATTATACATCGTGATCTCAAAGCAAGTAATATTCTATTAGACGATGAAATGAATCCGAAGATATCTGATTTTGGATTGGCAAGATTGTTTGTTATAGGTCAAACTCAAGGAAGTACAAATAGAATAGTCGGAACATATGGATATATGACACCAGAATATGTAATGTATGGAGAATTTTCAGTTAAATCAGATGTGTTTAGTTTTGGAGTATTACTTCTCGAGATTATAAGTGGTCATAAAAATAGTGCAAGCATTTGTCATGGGAAGAATATGGAATATCTATTAAGTTATGCGTGGAGAAGCTGGATGGAGGGGAACGCATCTAATCTTATAGATCCATCACTAAACAATATATCACAAAATGAAATAATGAGATGCATTCATATTGGTTTACTTTGTATTCAAGAAAATGTAGTTGACAGACCAACCATGGCTACTGTTGCACACATGCTTAATAGTTATTCTCTCACTCTCTCCATACCTTCCAAACCTGCATACTTTATGGGAAGTGGACCTAAAAAGCTACCAGATATGCAACTACTGGTTGAGGATGCAGCTGCAACAAGATTGGATGAATCGATTAACCAAGTTTCAGTTACCGAACCATATCCTAGATAG 1557 0.3532 MPLLSFSFVCYVFVTTISQAKAEEDPVSCDNNRGNYTASSTYDNNLKTLISTFSSHKVINYGFYNFSYGQDPDKAYAIGLCRGDLEPNQCFTNINNSFAYLKRQCPNQKEAIVWGVDFTLWYSDRSIFGIVENSPTLYLIYERNVSDVYAYNEEPEYCISYMGKYEDGVEDDMTNVESLRFNFNATIVATNGFSNTNKLGQGGFGVVYRGELPNGQMIAVKRLSKNSTQGDEEFKNEVLLVAKLQHRNLVRLLGFTLEGRERLLIYEYISNKSLDFFIFDPIRKAQMNWEIRYNIIKGIARGLLYLHEDSRLRIIHRDLKASNILLDDEMNPKISDFGLARLFVIGQTQGSTNRIVGTYGYMTPEYVMYGEFSVKSDVFSFGVLLLEIISGHKNSASICHGKNMEYLLSYAWRSWMEGNASNLIDPSLNNISQNEIMRCIHIGLLCIQENVVDRPTMATVAHMLNSYSLTLSIPSKPAYFMGSGPKKLPDMQLLVEDAAATRLDESINQVSVTEPYPR* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4843 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Psa6g4843 518 SUPERFAMILY Protein kinase-like (PK-like) 174 464 IPR011009 -
Psa6g4843 518 Pfam Salt stress response/antifungal 29 124 IPR002902 -
Psa6g4843 518 Gene3D Phosphorylase Kinase; domain 1 160 268 - -
Psa6g4843 518 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 153 - -
Psa6g4843 518 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 157 507 - -
Psa6g4843 518 ProSiteProfiles Gnk2-homologous domain profile. 24 127 IPR002902 -
Psa6g4843 518 CDD STKc_IRAK 199 465 - -
Psa6g4843 518 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 157 507 - -
Psa6g4843 518 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 153 - -
Psa6g4843 518 Gene3D Transferase(Phosphotransferase) domain 1 269 472 - -
Psa6g4843 518 Pfam Protein kinase domain 194 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4843 518 Gene3D - 26 126 IPR038408 -
Psa6g4843 518 SMART serkin_6 193 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4843 518 ProSitePatterns Protein kinases ATP-binding region signature. 199 221 IPR017441 GO:0005524
Psa6g4843 518 ProSiteProfiles Protein kinase domain profile. 193 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4843 Psa-Chr6 421487364 421490179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4843 169 518 Receptor kinase-like Gene Family AT4G21410 59.155 2.88e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g4843 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4843 - - mtr:MTR_5g065130 598.586