Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4840 ATGTTCAGCCTCCAAGATCAACAAGAGAACAATCAAAAGAAAGAGACACAATCAAACTTAACCAACAATAACTTCAAACTCTTTCTGCTCCTATCTGAAATGTTTCTGCTCTTCTTTCTGTTTTTATGGCTTACCTCAATAACTTCAACAACTTCATTGTCTCCAACTTTCAATGATATTTACTGTCCAAACAACACAACCTTCCAATCCAACAACAACACAATATTCAAAACAAACCTCAATGTCCTACTCTCCTCTCTCGTCACCAACGCCACGCTAGGCGGCGCTGATTTCTATTCAACCTTCATGGGATTGGGAACAACCAACGTTGTCAACGGTGTCTTCCTCTGCCGCGGTGACGTCAACTCCACCGTGTGTCAGAATTGTGTAACCACTGCAGCTACAGATATAACACGCCTCTGTCCTAACAAAACAGAGTCAATTATATGGTTTGATGAATGCATGCTGCGTTACACTAACCGTTATTTTAGCCCCACCAGTATCGTCCCAGGAGCGAATTTGAAAGATGACAAGAACATAACTACCTCGAAATTGGATACCTTTAATGGAATGTTGCTAAGTTTCTTGGATAGGTTGGCTAGAGAAGCTTCGAATTCTCAGACAGCGAAGCAATTCGCGACTGGTGAAGATAAATTCAACTTAAGCATAAGCAGCTCTTCGGTTTATGGATTGGCGCAGTGTGTCCCGGGATTGACGAATGTTCAGTGTGAGGAGTGTTTGGTAAACGCGTCGAGAACTCTTCTGACATGTTGTGAAGGAAAACAAGGTGCTAGAGCTCTTCTAGCATGGTGTAATATCAGATATGATTTCTACAAGTTTTACAATGCAACCGATGATTCATCTTCGCTTCCTCCTCCTTCTTCTGGAAAGAACAGGTCCGGGTCAAAAACAAGAACGGTCTTGATTGTTGTTCTTGTTACCGGGTCAACAATTCTGTTTTGTCTAGGCTGCTATTTCCTCATCAGAAGATCAGCTTGGAAGAAATATAAAACCCTTTTGAAAGAAAATTTTGGTGATGAAAGTGCGGCATTACAGTCACTACAGTATAATTTAACAACCATTGAAGCAGCCACAAAGAAATTTTCATCAGAGAATAAAATAGGCAGGGGAGGATTTGGAGAGGTTTACAAGGGTACTCTTATAGATGGAAGACAAATTGCGGTGAAAAAATTATCTCAGAGTTCAGGACAAGGTGGAGTAGAGTTCATAAATGAGGTTTTACTAATAGCGAAACTTCAACATAGAAATTTGGTAACCTTAATAGGTTTTTGTTTGGAAGACCACGAGAAAATGCTCATTTACGAATACGTGCCCAACAAAAGTCTGGATTACTTTTTATTTGATCGCCACAAGGCTAGATTATTACACTGGTTTGAACGTTATAAGATCATCGAAGGAATTGCACATGGAATACATTATCTGCACAACCATTCAAGATTGAAGATTATTCATCGTGATCTCAAACCTAGTAATGTGTTGTTAGATGACAATATGAATCCTAAAATATCTGATTTTGGCATGGCACGAATGGTGGCTCTAGATCAAGATCGAGGAAGTACAAACAGAGTTGTTGGAACATAA 1602 0.3976 MFSLQDQQENNQKKETQSNLTNNNFKLFLLLSEMFLLFFLFLWLTSITSTTSLSPTFNDIYCPNNTTFQSNNNTIFKTNLNVLLSSLVTNATLGGADFYSTFMGLGTTNVVNGVFLCRGDVNSTVCQNCVTTAATDITRLCPNKTESIIWFDECMLRYTNRYFSPTSIVPGANLKDDKNITTSKLDTFNGMLLSFLDRLAREASNSQTAKQFATGEDKFNLSISSSSVYGLAQCVPGLTNVQCEECLVNASRTLLTCCEGKQGARALLAWCNIRYDFYKFYNATDDSSSLPPPSSGKNRSGSKTRTVLIVVLVTGSTILFCLGCYFLIRRSAWKKYKTLLKENFGDESAALQSLQYNLTTIEAATKKFSSENKIGRGGFGEVYKGTLIDGRQIAVKKLSQSSGQGGVEFINEVLLIAKLQHRNLVTLIGFCLEDHEKMLIYEYVPNKSLDYFLFDRHKARLLHWFERYKIIEGIAHGIHYLHNHSRLKIIHRDLKPSNVLLDDNMNPKISDFGMARMVALDQDRGSTNRVVGT* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4840 533 ProSiteProfiles Gnk2-homologous domain profile. 56 163 IPR002902 -
Psa6g4840 533 Gene3D - 56 163 IPR038408 -
Psa6g4840 533 Gene3D - 173 280 IPR038408 -
Psa6g4840 533 Pfam Protein kinase domain 369 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4840 533 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 533 - -
Psa6g4840 533 SUPERFAMILY Protein kinase-like (PK-like) 352 533 IPR011009 -
Psa6g4840 533 Pfam Salt stress response/antifungal 62 160 IPR002902 -
Psa6g4840 533 Pfam Salt stress response/antifungal 183 277 IPR002902 -
Psa6g4840 533 ProSiteProfiles Gnk2-homologous domain profile. 168 280 IPR002902 -
Psa6g4840 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Psa6g4840 533 Gene3D Phosphorylase Kinase; domain 1 331 443 - -
Psa6g4840 533 Coils Coil 4 24 - -
Psa6g4840 533 ProSiteProfiles Protein kinase domain profile. 368 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4840 533 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 36 533 - -
Psa6g4840 533 SMART serkin_6 368 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4840 533 ProSitePatterns Protein kinases ATP-binding region signature. 374 397 IPR017441 GO:0005524
Psa6g4840 533 Gene3D Transferase(Phosphotransferase) domain 1 444 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4840 Psa-Chr6 421398118 421401224 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4840 39 533 Receptor kinase-like Gene Family AT4G05200 44.314 5.43e-138 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g4840 Pkinase 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4840 - - ccaj:109813299 676.781