LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g4838	ATGCTTTCTTCGCGTTGCCTTCTGTTTTTACTTGTTCCTCTGTTTTTCACAGTAAATTCTGAAGCCGACGACCAACTAATTTTCCGCTACCACAAATGTAACAATGATCTCGGAAACTACACCGGCGGTAGCGCCTATCAAAACAACCTTGCCTCCGTTCTAAAAGATATTTATTCCAACAGAGAAATAGACTACGGATTCTACAATTTCTCTAAAGGCGAAGAAGAACCTGACATAGTATACGCAATCGGATTCTGCAGAGGTGACATTCATCCAAACGATTGCCGTGACTGCTTGAAAACCTCGGCAGTACTTCTCACAGATCGGTGCAGAATACAGAAAGAGGCAATAGGTTACTACGACATATGCACCTTACGCTATTCGAACACATCAATTTTTGGTGTCATGGATACTAATACCGGTCAATATTACAACATCGAAAGCAAAACAGTGGTGGATGATGCGTTTAATCAAACACTTAATGGCTTGTTAGATGAACTTAAAAGCGCAGCAGCGGAAGGTGATTCGCGTAAGAAGTTCGATGAAAAGAATGTTAAAGTAAATGAATCGAATTCTAATAATGAGACTATATATGGTATGGTTCAGTGTACGCCAGATTTAACAAAATCAAATTGTACTAAATGTTTGAATTTAGCTTACGGTGATCTTTCAAGGTGGTGTCCAGAAATGAAAGGCTGTTTGTATCTTGGACCAAGTTGTTCAGTTAGATATGATATAGTTCCGTTTTCTCAGTCCATAGTTACAGATTCACCCGCACCACAACCTTCTCCTCAAACCTCCTCGATTAACTCTGCCACTAACACTATCACTTCTACTACCACCACCACTAAAGGAAAGAGGAGGAAAACAAGAACTGCTGTCGCTATCGTTTTAGCAATTGTTGTAGCTGGCATAGTGGTAGTTGGTGGATGTATTTATTTTGGAAGGAGAAAGCCAAGAGCCGAGTATATGGCTGAAATTGAAGTCCAAGAGACATATGAAGATGAAGATGAAGTTAAAGCTGGCAATGATCTGAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCATCAAATTAGCTACAAGCAACTTTTCTGATGCAAATGCGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTACACTTGATGGACATGATGTTGCTATCAAAAGGTTGGCTAACACTTCCAAGCAAGGAGAAACAGAATTCAAGAATGAAGTTTTACTTACAGGGAAGCTTCAACATCGAAATTTAGTTAAACTATTAGGGTTTTGTTTACATAGAGGAGAAAGATTGCTAATATACGAGTTTGTCCCCAATAAAAGTCTCGACTATATCATATTTGATCCAATCAAACGGGCGAATTTAAATTGGGAAAGACGCTTCAAAATCATTAAAGATATTGCTCGTGGTCTTCTCTATCTTCATGAAGATTCTCGACTACAGATTGTTCACCGTGATCTCAAAACAAGTAATATTCTTCTGGATGATGAAATGAATCCAAAAATTACAGACTTTGGCATTGCAAGATTGTTTGCCGCCAAACAAACACATGGCATGACAAGTACGATTATTGGAACATAA	1590	0.3862	MLSSRCLLFLLVPLFFTVNSEADDQLIFRYHKCNNDLGNYTGGSAYQNNLASVLKDIYSNREIDYGFYNFSKGEEEPDIVYAIGFCRGDIHPNDCRDCLKTSAVLLTDRCRIQKEAIGYYDICTLRYSNTSIFGVMDTNTGQYYNIESKTVVDDAFNQTLNGLLDELKSAAAEGDSRKKFDEKNVKVNESNSNNETIYGMVQCTPDLTKSNCTKCLNLAYGDLSRWCPEMKGCLYLGPSCSVRYDIVPFSQSIVTDSPAPQPSPQTSSINSATNTITSTTTTTKGKRRKTRTAVAIVLAIVVAGIVVVGGCIYFGRRKPRAEYMAEIEVQETYEDEDEVKAGNDLKVGDLLQFDFETIKLATSNFSDANALGQGGFGTVYKGTLDGHDVAIKRLANTSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLHRGERLLIYEFVPNKSLDYIIFDPIKRANLNWERRFKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDDEMNPKITDFGIARLFAAKQTHGMTSTIIGT*	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g4838	529	Gene3D	Transferase(Phosphotransferase) domain 1	440	529	-	-
	Psa6g4838	529	Pfam	Protein kinase domain	367	525	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g4838	529	ProSiteProfiles	Gnk2-homologous domain profile.	137	249	IPR002902	-
	Psa6g4838	529	SMART	serkin_6	365	527	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g4838	529	MobiDBLite	consensus disorder prediction	255	285	-	-
	Psa6g4838	529	ProSiteProfiles	Protein kinase domain profile.	365	529	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g4838	529	ProSiteProfiles	Gnk2-homologous domain profile.	28	132	IPR002902	-
	Psa6g4838	529	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Psa6g4838	529	Gene3D	-	138	249	IPR038408	-
	Psa6g4838	529	Gene3D	-	25	131	IPR038408	-
	Psa6g4838	529	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	9	529	-	-
	Psa6g4838	529	MobiDBLite	consensus disorder prediction	255	283	-	-
	Psa6g4838	529	Pfam	Salt stress response/antifungal	153	245	IPR002902	-
	Psa6g4838	529	Pfam	Salt stress response/antifungal	33	129	IPR002902	-
	Psa6g4838	529	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	9	529	-	-
	Psa6g4838	529	Gene3D	Phosphorylase Kinase; domain 1	325	439	-	-
	Psa6g4838	529	ProSitePatterns	Protein kinases ATP-binding region signature.	371	392	IPR017441	GO:0005524
	Psa6g4838	529	SUPERFAMILY	Protein kinase-like (PK-like)	350	529	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g4838	Psa-Chr6	421384286	421393233	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g4838	36	529	Receptor kinase-like Gene Family	AT4G21410	42.292	1.25e-125	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Psa6g4838		Pkinase	1.5e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g4838	-		-	gmx:100787936	507.679