Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4836 ATGAATTCCACCGTCTCTTCAAATTTCTTCAACCTTCTGTTTCTCTTCATCTTTCTCACAACCATCAAAGCCGCCCCCACTTTCCTCTACCAAGTTTGTTCAAAAAACAAAACAAACACCAACAGCACCTACGAAACAAAACTCAAAACTCTCTTTTCTTCACTATCTTCCAACGCCACCGACAACAATGAATTCTACAACACCACAATCCCTAGCAAAAACCCTTCAAACACCGCATACGGTCTGTTCATGTGCAGAGGCGACGTTTCATCTCCCCTCTGCCAACAATGCGTCGCAAACGCAACACAGACACTATCCACAGGCTCAGATTGTTCCTTATCCAAACAAGCTGTAATCTGGTACGACGAGTGCATGGTTCGATACTCAAACACCTCTTTTTTCTCCACCGTCGCTACAGTGCCCAATCTTTTAATGTGGAACACTGCGAATATCACGAACCAGGAAAGCTTCATGAAATTGTTGTCTGTTACTATGAACGAATCAGCAGATAAAGCGGCGAATTCTTCTGTTGGTGCTAAGAAATATGCTACAAAGGAAGCTACGATCTCTGGATTCCAAACGCTATACTGTATGGCTCAGTGTACAGACGATTTATCTCCACTAGATTGTAGTTCATGTCTTAGTGTTGCCATTGGAGCTCTTCCACAGTGTTGTAATGGAAAACAAGGAGGAAGAGTTTTATTTCCAAGCTGTAATATTAGGTATGAATTGTACCCTTTTTATGAAAACAATACTCCCTCATCGCCGCCTTCAACGCCACCGGCATCTTCAGCACCACCAGGGATTGTTCCTCCAACAAACACTTCTAGTTTGGGAGGTAGTAGTGGGATCACATCGGGGACAATTGTTGCAATTGTGGTTCCAATTACAGTGGCCGTGCTGCTATTTATCGTAGGAATTTGTTTCTTATGTATAAGAGGGCGGAAGAAGAAGCATGACTCTGCTGCAGCACGCGATCCGAAAACTGAAACCGATATTACCACTGTGGAATCCTTGAGATATGATTTGAGTACACTTGAAGAAGCCACAAACAAATTCTCAGAAGCTAATAAGCTAGGTGAAGGTGGTTTTGGTGAAGTTTATAAGGGCGTACTCCCGAGCGGAGAACAAATTGCTGTCAAGAGACTCTCTAAACACTCGGGACAAGGCGGAGAACAATTTAAGAATGAAGTTGAACTGGTTGCACAGCTTCAACATAGAAATTTGGCTAGGCTTCTTGGGTTTTGTTTGGAAAGAGAAGAAAAGATACTTGTTTATGAATTTGTAGCCAACAAAAGTCTTGACTATATTCTTTTTGATCCTGAAAAGCAAAGGTTGTTGTATTGGACAAGGCGTTACAAGATTATTGGAGGGATTGCTCGGGGTATTCAATATCTTCATGAAGATTCTAGGCTTAAAATTATTCATCGGGATCTCAAAGCTAGCAACATACTGTTGGATGGAGATATGAATCCAAAAATCTCTGATTTTGGCATGGCAAAATTATTTGGAGTGGATCAAACTAAAGGAAATACGAGCAGGATAGTCGGGACATACGGTTACATGTCTCCGGAGTATGCAATGCAAGGAGATTTCTCTATTAAGTCTGATGTATATAGTTTCGGAGTTCTCGTTATGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGGAGCTGCTGAGGATTTAGTGAGCTATGCGTGGAAACTTTGGAAGAATGGAACACCTTTGGAATTGGTGGACCATACAGTAAGAGAATCCTATACTCCAAATGAAGCTATAAGATGCATCCATATTGGTTTATTATGTGTCCAAGAAGATCCAGACGATAGACCTACAATGGCAACAATAGTACTCATGCTTGAAAGTCACACTGTTACTCTACCGGTACCGAAGCAGCCTGCATTTTTTCTACAAAGTGGAGCTGATCCGGACATGCCAACAATACAGATTAGTCAATCTGATAATACCAATTGA 1986 0.4149 MNSTVSSNFFNLLFLFIFLTTIKAAPTFLYQVCSKNKTNTNSTYETKLKTLFSSLSSNATDNNEFYNTTIPSKNPSNTAYGLFMCRGDVSSPLCQQCVANATQTLSTGSDCSLSKQAVIWYDECMVRYSNTSFFSTVATVPNLLMWNTANITNQESFMKLLSVTMNESADKAANSSVGAKKYATKEATISGFQTLYCMAQCTDDLSPLDCSSCLSVAIGALPQCCNGKQGGRVLFPSCNIRYELYPFYENNTPSSPPSTPPASSAPPGIVPPTNTSSLGGSSGITSGTIVAIVVPITVAVLLFIVGICFLCIRGRKKKHDSAAARDPKTETDITTVESLRYDLSTLEEATNKFSEANKLGEGGFGEVYKGVLPSGEQIAVKRLSKHSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEREEKILVYEFVANKSLDYILFDPEKQRLLYWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNILLDGDMNPKISDFGMAKLFGVDQTKGNTSRIVGTYGYMSPEYAMQGDFSIKSDVYSFGVLVMEIISGKKNSSFYETGAAEDLVSYAWKLWKNGTPLELVDHTVRESYTPNEAIRCIHIGLLCVQEDPDDRPTMATIVLMLESHTVTLPVPKQPAFFLQSGADPDMPTIQISQSDNTN* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4836 661 SUPERFAMILY Protein kinase-like (PK-like) 338 649 IPR011009 -
Psa6g4836 661 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Psa6g4836 661 CDD STKc_IRAK 359 625 - -
Psa6g4836 661 ProSiteProfiles Gnk2-homologous domain profile. 139 247 IPR002902 -
Psa6g4836 661 ProSiteProfiles Protein kinase domain profile. 353 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4836 661 Gene3D Phosphorylase Kinase; domain 1 315 428 - -
Psa6g4836 661 Pfam Protein tyrosine and serine/threonine kinase 356 623 IPR001245 GO:0004672|GO:0006468
Psa6g4836 661 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 651 - -
Psa6g4836 661 SMART serkin_6 353 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4836 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Psa6g4836 661 ProSiteProfiles Gnk2-homologous domain profile. 26 133 IPR002902 -
Psa6g4836 661 Pfam Salt stress response/antifungal 150 245 IPR002902 -
Psa6g4836 661 Pfam Salt stress response/antifungal 33 130 IPR002902 -
Psa6g4836 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 651 - -
Psa6g4836 661 Gene3D Transferase(Phosphotransferase) domain 1 429 632 - -
Psa6g4836 661 Gene3D - 141 247 IPR038408 -
Psa6g4836 661 Gene3D - 25 133 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4836 Psa-Chr6 421355286 421358041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4836 13 660 Receptor kinase-like Gene Family AT4G05200 55.215 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g4836 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4836 - - lang:109353867 911.368