Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4827 ATGTCAACCGGAAGGAAAAGTCGTGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAATTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGACTTTTCAAGAAAGCCAGTGAACTTTGCACACTTTGTGGTGCTGATGTTGCTCTTGTTGTATTCTCACCTGGTGAGAAGGTGTTTTCCTTTGGTCACCCACATGTTGATACGGTCATAGATCGTTATCTATCACGGGTTCCACCCCAAAACAATGGCACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGAGAGATCTCAATAACCAACTGACTCAAATCAACAATAAATTGGACATTGAGAAGAAACGTGGTGATGAGCTGAGCCATTTGCGCAAGGCAACTGAGGATCAGTTTTGGTGGGCTTGTCCAATTGAAGGGATGAATAGGGCTCAACTTGAATTATTTAAGAAGGCATTGGAGGAACTTAAGAAACTTGTTGCACAACATGCTGATAGGCTTGTAATTCAGGGTGCACCTACTCAAACTATTCCATTTTTTGTTGGAAATGGTTCAAACTCTAACGTGCCAATTCATCACCAGGCAAATCCTCAACAAGCTCAAATGTTTCAGCAACAATTTTTCCAGAATCCTATGATGCAACCTCATTTGTTTGGTTTCAACAATATGGGTGGAAGTGGTGGATATGGACCCTCTGGATTCTTTTGA 714 0.423 MSTGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPHVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRDLNNQLTQINNKLDIEKKRGDELSHLRKATEDQFWWACPIEGMNRAQLELFKKALEELKKLVAQHADRLVIQGAPTQTIPFFVGNGSNSNVPIHHQANPQQAQMFQQQFFQNPMMQPHLFGFNNMGGSGGYGPSGFF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4827 237 Gene3D - 88 174 - -
Psa6g4827 237 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Psa6g4827 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g4827 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g4827 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa6g4827 237 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Psa6g4827 237 Coils Coil 148 168 - -
Psa6g4827 237 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 193 - -
Psa6g4827 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa6g4827 237 PANTHER MADS BOX PROTEIN 7 193 - -
Psa6g4827 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa6g4827 237 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Psa6g4827 237 Coils Coil 99 119 - -
Psa6g4827 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4827 Psa-Chr6 420989293 420990326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4827 5 189 Type I MADS-box Gene Family AT5G60440 57.447 1.59e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4827 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4827 - - mtr:MTR_1g106070 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4827 6 420989293 420990326 Psa6g4827 6 420989293 420990326 ECH