Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4817 ATGTCAATGGGAAGGAAAGGTCATGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGCAAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGGCTCTTCAAGAAAGCCAGTGAACTTTGCACACTTTGTGATGCAGATGTTGCTCTCATTGTATTCTCACCTGGTGAGAAGGTGTTTTCCTTTGGTCACCCACATGTTGATACAGTCATAGATCGTTATCTATCACATGTTCCACCCCAAAACAATGACACCATGCAATTCATTGGGGTTCATCGTGGCGCCATTTTGCGTGAGCTCAATAGTCAGCTAACCAAAATCAACAATATGCTGGACATTGAGAAGAAGTGTGGTGATGAGCTGAGCCATTTACGCAAGGCAATTGAGGCTCAGTTTTGGTGGGTTTGTTCCATTGATAGAATGAATAGAGCTCAACTTGAATTATTCAAGAAGGTTTTGGAGGAACTTAAGAAACTTGTTGCACAATATGTTAGGCTTGTAATTCAGGGTTCACCTGTCCAAACTATTCAACCACAATTTTTTCAAAATCCTATGATGCAACCTCATTCTTCTAATTTCAATAGTACGGAGGGAAGTGGCGGATATGAATTCTCTCAATTCTTTTGA 633 0.4092 MSMGRKGHGRQKIEMKKMSNASNLQVTFSKRRSGLFKKASELCTLCDADVALIVFSPGEKVFSFGHPHVDTVIDRYLSHVPPQNNDTMQFIGVHRGAILRELNSQLTKINNMLDIEKKCGDELSHLRKAIEAQFWWVCSIDRMNRAQLELFKKVLEELKKLVAQYVRLVIQGSPVQTIQPQFFQNPMMQPHSSNFNSTEGSGGYEFSQFF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4817 210 CDD MADS_MEF2_like 9 79 IPR033896 GO:0000977|GO:0045944
Psa6g4817 210 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Psa6g4817 210 PANTHER MADS BOX PROTEIN 8 167 - -
Psa6g4817 210 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g4817 210 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g4817 210 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Psa6g4817 210 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 167 - -
Psa6g4817 210 SUPERFAMILY SRF-like 9 86 IPR036879 GO:0003677|GO:0046983
Psa6g4817 210 Gene3D - 88 170 - -
Psa6g4817 210 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa6g4817 210 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa6g4817 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4817 Psa-Chr6 420004127 420005006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4817 3 163 Type I MADS-box Gene Family AT5G60440 55.488 1.04e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4817 SRF-TF 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4817 - - mtr:MTR_1g106070 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4817 6 420004127 420005006 Psa6g4817 6 420004127 420005006 ECH