Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4816 ATGTCAATGGGAAGGAAAGGTCATGGTCGTCAAAAGATTGAGATGAAAAAGATGAGCAATGCGAGCAACCTGCAAGTGACTTTCTCGAAGCGTCGCAGTGGGCTCTTCAAGAAAGCCAGTGAACTTTGCACACTTTGTGATGCAGATGTTGCTCTCATTGTATTCTCACCGGGCGAGAAAGTGTTTTCTTTTGGTCACCCACATGTTGATACGGTCATAGATCGTTATCTATCACATGTTCCACCCCAAAACAATGATGCCATGCAATTCATCGAGGTTCATCGTGGCGCCATTTTGCGTGAGCTCAATAGTCAGCTAACTAAAATCAACAATATGTTGGACATTGAGAAGAAGTGTGGTGATGAGCTGAGCCATTTGCGCAAGGCAATTGAGGCTCAGTTTTGGTGGGCTTGTTCCATTGATAGAATGAATAGAGCTCAACTTGAATTATTCAAGAAGGTTTTGGAGGAACTTAAGAAACTTGTTGCACAATATGTTGGGCTTGTAATTCAGGGTGCACCTATCCAAACTATTCAACCCCAATTTTTTCAAAATCCCTATCGATGCAACTCATTCTTCTAA 582 0.4227 MSMGRKGHGRQKIEMKKMSNASNLQVTFSKRRSGLFKKASELCTLCDADVALIVFSPGEKVFSFGHPHVDTVIDRYLSHVPPQNNDAMQFIEVHRGAILRELNSQLTKINNMLDIEKKCGDELSHLRKAIEAQFWWACSIDRMNRAQLELFKKVLEELKKLVAQYVGLVIQGAPIQTIQPQFFQNPYRCNSFF* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4816 193 CDD MADS_MEF2_like 9 79 IPR033896 GO:0000977|GO:0045944
Psa6g4816 193 Gene3D - 88 169 - -
Psa6g4816 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Psa6g4816 193 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Psa6g4816 193 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 174 - -
Psa6g4816 193 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Psa6g4816 193 PANTHER MADS BOX PROTEIN 7 174 - -
Psa6g4816 193 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Psa6g4816 193 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Psa6g4816 193 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Psa6g4816 193 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Psa6g4816 193 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4816 Psa-Chr6 420001039 420001794 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4816 3 163 Type I MADS-box Gene Family AT5G60440 56.098 5.91e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa6g4816 SRF-TF 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4816 - - mtr:MTR_1g106070 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4816 6 420001039 420001794 Psa6g4816 6 420001039 420001794 ECH