Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4812 ATGGCGCAACCATCATCATCCTCACCCCCACTCCTTAGTCTCGACGCCGTAGATGATGTTTACTTCTCCGTCGTCTCCGATGATGAAACCGACCCTACCCCTGTCTCCGATCAAAAGTACGCTGAAGCGTTACAGTTCCAAGAAGCGTTAATGTCCTCTGTCATCACTTCGTCCCAACCACAACCACCACCGTGCGTAGCATCTTCGTCAGAAACCGTCGATGAAGAGTTACTGTTCAATGAAACCCTTAAGGACTCACTCATCACTTCCCAATATGTTTCCTCATCAACTTCCCCGCCATTACGCTACGTAGCATCTTCATCAAAGGCCGTTGAAGTTGATCCTCTCGTGACCAAAGAACAAGAACAAGAACCGATCATCATTTGCGAGATTTGCGCTGAAGCAAAAACGGACGAGGAAATGTTCAGGAATCAAGGATGTTACCATTCCTTTTGTTCCGAATGTGTTGTTAAACAAGTGGCAACGAAAATCCAAGAGAACATAACGGTTGTTTCTTGCCCTGGTTTGAACTGCGAGGGTGTGTTGGAGCTTGAAACCCTAAGGCCATTGCTTCCCAAAGAACTGATTGATAGGTGGGATGATGCAATGTGTGAGGCTCTTTTGCTTACTGTTCCTAAATTCTACTGCCCTTTTAAGGATTGTTCTGCCATGTTGCTTGATGAGGATGAAGAGGGAGGGGAAGGTATTAGGGAATCTGAATGTCCTTTTTGTCATAGATTGTTTTGTGCTAGGTGTCATGTTTCTTGGCATCCTGGGGTTAGTTGTGAGGAGTTTCAGACACTGAATGTGGATGAAAGAGGAAGCCAAGATCTTCTTGTTAGAGAGCTTGCTAATCAGAAGAAATGGAAAAGGTGTTCTAGATGCAGGTTCTATGTTGAGAAAAAGGAGGGGTGTTTGCATATTACATGCAGAGAACCATGGACAAATACTCATGGTGGGTGCCAAAGAAATTAG 975 0.4492 MAQPSSSSPPLLSLDAVDDVYFSVVSDDETDPTPVSDQKYAEALQFQEALMSSVITSSQPQPPPCVASSSETVDEELLFNETLKDSLITSQYVSSSTSPPLRYVASSSKAVEVDPLVTKEQEQEPIIICEICAEAKTDEEMFRNQGCYHSFCSECVVKQVATKIQENITVVSCPGLNCEGVLELETLRPLLPKELIDRWDDAMCEALLLTVPKFYCPFKDCSAMLLDEDEEGGEGIRESECPFCHRLFCARCHVSWHPGVSCEEFQTLNVDERGSQDLLVRELANQKKWKRCSRCRFYVEKKEGCLHITCREPWTNTHGGCQRN* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4812 324 ProSiteProfiles REJ domain profile. 1 28 IPR014010 -
Psa6g4812 324 SUPERFAMILY RING/U-box 273 322 - -
Psa6g4812 324 ProSiteProfiles TRIAD supradomain profile. 125 324 IPR044066 -
Psa6g4812 324 SMART ibrneu5 197 262 IPR002867 -
Psa6g4812 324 ProSiteProfiles Zinc finger RING-type profile. 129 174 IPR001841 -
Psa6g4812 324 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Psa6g4812 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 207 IPR013083 -
Psa6g4812 324 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 68 311 IPR031127 GO:0004842|GO:0016567
Psa6g4812 324 SUPERFAMILY RING/U-box 201 267 - -
Psa6g4812 324 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 68 311 - -
Psa6g4812 324 SUPERFAMILY RING/U-box 124 206 - -
Psa6g4812 324 Pfam IBR domain, a half RING-finger domain 203 262 IPR002867 -
Psa6g4812 324 Gene3D - 259 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4812 Psa-Chr6 419656945 419659442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4812 129 312 C3H Transcription Factor Family AT2G19610 27.895 5.63e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4812 K11975 - qsu:112001859 305.834