Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4796 ATGTGTGATCGTGATCGTGAACAAGTCCCAAACAACTCGGACTCGTTTGATCTTCGATACCTACTACTTGACCACTCAGATACGTTGGATCTTCAACCTGATCACTCGGATAGGTTTGATCTTCAACCACATCAACAACAAGTGCAACATCAAAATATGCTTGATTCTCCTCAACAAGTACTACAACAACAACAACAATTTTTAGATGTGTCAACCAAAAACGCTTCCTCATCAAATGATCAAGGGATTAATCAAAGTCCAAATTTCGGAAACAAAGTTGTTTCTTTTGATGGAGACCAAGATCTCAACCAAGAGCAACAAAATATGAGCACTAATCGGCACTCACATGAACAAATACGAGAATTGGAAAAGGTTTTCAAGCATTGCCCTCACCCTGATCGAGAAGAAAGGCAAAAGATGAGCCGTGTGCTAGGTATTGAGCCTATCAAAATCAAGTTTTGGTTCCAAAATAAGCGAAATCAACATAAGGTAATGCAAGAACGAAACCAAAACAATCTTTTGAGACAAGAGAATGCAAGGCTTCGCGCCGAGAATGAGTTGCGTAATGAGGCATTGAAAAACACTAAATGTCTACATTGTGGAGGTCCAGTTTCTATTGGTAAAATGTGCTTTAACCAAAACCAACTTAGAATTGAGAATTCCATATTAAAGTCTAAGATTGAAATGTTGTCGAGAGTTTCAAGAAATGATAGAAATGTAACTCAAAGTGATTGTGATATCACTTCAAGTATGATTGAGGAGTTGTATTATAATGGGAATGATCCATTTGCTTCACTTTCAACTTCTTATTTTGACAAACAAAAGATCGTAGAACTTGTTACAGTTTCTATGGAGGAACTCACAAGGTTAACTCTAGCTGGAGCTCCTTTGTGGATCTCTACAAATGAGTCTGAGATTATAAATGATGTAGAATACACTAGGGTTTTCCCTAATGTAATTGGTCCAAAACTCGTTGGTTTTATATCTGAATCTTCAAGGGAATCAATGATTGTTACTATGAATCATATTAATCTCATTGAGACTCTTATGAATGTGAATCAATGGTCTGCGATGTTTTCTGACATTGTTTCCAAAGCAATGACAATTGAAGTTCTATCACATGGAGTATCTGAAAACTATGATGGACTAGTACAAGTGATGTCAGCTGATTTTCAAGTTCCTTCGCCACTTGTTCGTGCTCGTGAAAACTATTTCGCTAGATATTGCAAGAAGTATCAAGAAGGAACATGGGTGGTGGTTGATGTTTCCTTGGATCATCTCCGACCGAGTAGCAGTACAACGCCAAGAAGTCGAAGACGACCCTCCGGTTGTTTAATTCAAGCATTACCATATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAAGTGGATTACACTACATTATTGTTGAATAGGTTTTATGACTCTTTAATAACTTCAAATCTTGCCTTTGGAGCTAAGAGATGGGTGGCATCACTAGGTAGACAATGCGAACGTCTCGCTTATTCAATGGCCACCAACTTACCTGCACGAGACTATTATGTGATGAACAGTTTTCAAGGAAGGACGATCTTACTGAATTTGGCAGAAAGAATGAAATTGTGTTTTTCGTCTGTTGTTGGTTCATCCGTAGCAAGTTGTTGGAATGTTCTAACATCTGATTCTCATGATGTAAGAGTCATGTCCAAAACAAACACTGAACCTGGATCGCCTCCTGGTGTAATTCTTAATGGTGCAACTTCTCTTTGGCTTCCGGTTCTTCCAAGGAAACTGTTTGATTTTCTTGGAAATCAAAGTTCAAGAAGTGAGTGGAATATTCTTTCCATTGGAAGTATAACTAAAGAAATGGCACATGTACGACATGGTCATGATCTTGGAAACTGTGTCTCTTTATTTCATGTCAATAGCCAAAACTCCATGCAAAATAATGATATGTTTCTACTTCAAGACAATAGCTTTGATAGAACTTGCTCACATGTAATCTATGCTCCTGTTGATATCAACTCGGTGAATGTAGTATTCAATGGCGGAGATCCAAATATTATTGCTTTGTTTCCTTCTGGTTTTGTTATTCTTCCAGATGGGGTTCAACTCAGCAATGGAGGATCAACGGAGAATTCTATTGGATGCCGAGGTTGTTTGTTAACAATTTCATTTCAGATTTTGGTTGGTTTGAATCCAGCATTAAGAATAGAAAATGGCTGGGTTGAAGCTGTTGTGAATTTGGTTGAAAACACAGCTGAAAGAATCAAGGTTGCAATGGCATGA 2271 0.3791 MCDRDREQVPNNSDSFDLRYLLLDHSDTLDLQPDHSDRFDLQPHQQQVQHQNMLDSPQQVLQQQQQFLDVSTKNASSSNDQGINQSPNFGNKVVSFDGDQDLNQEQQNMSTNRHSHEQIRELEKVFKHCPHPDREERQKMSRVLGIEPIKIKFWFQNKRNQHKVMQERNQNNLLRQENARLRAENELRNEALKNTKCLHCGGPVSIGKMCFNQNQLRIENSILKSKIEMLSRVSRNDRNVTQSDCDITSSMIEELYYNGNDPFASLSTSYFDKQKIVELVTVSMEELTRLTLAGAPLWISTNESEIINDVEYTRVFPNVIGPKLVGFISESSRESMIVTMNHINLIETLMNVNQWSAMFSDIVSKAMTIEVLSHGVSENYDGLVQVMSADFQVPSPLVRARENYFARYCKKYQEGTWVVVDVSLDHLRPSSSTTPRSRRRPSGCLIQALPYGYSKVTWVEHVEVDYTTLLLNRFYDSLITSNLAFGAKRWVASLGRQCERLAYSMATNLPARDYYVMNSFQGRTILLNLAERMKLCFSSVVGSSVASCWNVLTSDSHDVRVMSKTNTEPGSPPGVILNGATSLWLPVLPRKLFDFLGNQSSRSEWNILSIGSITKEMAHVRHGHDLGNCVSLFHVNSQNSMQNNDMFLLQDNSFDRTCSHVIYAPVDINSVNVVFNGGDPNIIALFPSGFVILPDGVQLSNGGSTENSIGCRGCLLTISFQILVGLNPALRIENGWVEAVVNLVENTAERIKVAMA* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4796 756 Pfam Homeodomain 113 163 IPR001356 GO:0003677
Psa6g4796 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 98 755 - -
Psa6g4796 756 Gene3D - 97 181 - -
Psa6g4796 756 SMART START_1 278 500 IPR002913 GO:0008289
Psa6g4796 756 SUPERFAMILY Bet v1-like 272 502 - -
Psa6g4796 756 SMART HOX_1 106 169 IPR001356 GO:0003677
Psa6g4796 756 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Psa6g4796 756 SUPERFAMILY Bet v1-like 548 751 - -
Psa6g4796 756 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Psa6g4796 756 CDD homeodomain 113 166 IPR001356 GO:0003677
Psa6g4796 756 Coils Coil 164 194 - -
Psa6g4796 756 Pfam START domain 284 500 IPR002913 GO:0008289
Psa6g4796 756 SUPERFAMILY Homeodomain-like 103 166 IPR009057 -
Psa6g4796 756 Gene3D - 328 484 IPR023393 -
Psa6g4796 756 ProSiteProfiles START domain profile. 269 503 IPR002913 GO:0008289
Psa6g4796 756 CDD START_ArGLABRA2_like 273 499 - -
Psa6g4796 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 98 755 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4796 Psa-Chr6 418798476 418801942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4796 50 756 Homeobox Transcription Factor Family AT4G04890 48.865 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa6g4796 START 7.8e-39 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4796 K09338 - qsu:112016283 674.085