Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4793 ATGATGAGACTGCGCCGTCCATTCTATGGAGTTGGAGATCCATTTGCCATGGACGCTGATGATCAATTAAGGAAGAAACGGGATTCTGAGAAACTGTCAAGATTAGAAGAGGCGGAGAAAAATCATATAGAGACAACAAAAAGAAGGTTTTTTGCAGAAGTACTCAATACTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGTGCAGAGAAATTGAGATTCCAGGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTATTGGTAAATTTAGGAGCAGCTGTTCAACGTCAAAGGGACTTCAAACATTCAGATGGCATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCCTCAAAGAATGGGATTTCTAAGGAATCACCTGTTGATGAAGATATAGATGCGATAGATTCTGATCATAATGATGGTGACTCAAACGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATTCATTCAATTCAGGAAAAGGTAACTGAACAACCGTCTATACTTCAAGGTGGAGAGTTAAGATCATATCAGATAGAGGGGTTGCAATGGATGATTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCGGATGAAATGGGGCTTGGGAAAACAATACAAACTATTTCTCTCATAGCACATCTTTTAGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACATGGGCTCCTACCATTAAAGTTATTCTTTATGATGGACGAATGGATGAGAGAAAAGCAATAAAGGATGAATTTTCAGGAGAGGGGAAATTTAATGTTATGATAACACATTATGATCTTATAATGAGAGACAAAGCATTTCTCAAAAAAATTAAATGGAACTACTTAATTGTGGATGAAGGTCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAAAACCTTGGACAATAGCTATAACATCCAACGGAGACTTTTGCTGACTGGTACCCCTATTCAGAATAGTTTGCAAGAATTGTGGTCTCTGCTTAATTTTCTCCTTCCTAACATATTCAACTCCGTTCAAAATTTTGAGGACTGGTTCAATGCCCCCTTTGCAGACAGAGTTGATGTCTCTCTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTACATCAAGTTATAAGGCCCTTCATATTACGAAGGAAAAAGAATGAGGTGGAAAAATTTCTTCCTGGGAAGTCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGACGTAGGAAGAGTTGGTTTGGACAATGGTTCTGGCAAATCGAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAATTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACACTCTCGAAGTTTATTTAAGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACGAAAACCGAAGAAAGAGGCTCTTTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTATTAAGCACCCGGGCTGGTGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCTCATCGCATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTAAGTGTGGGATCAATTGAAGAGGTAATTTTGGAGCGTGCAAAACAAAAGATGGGTATAGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGACGAGGCTCAAGCTCACTCGGGGCAGATGTGCCTAGTGAGAGAGAAATTAACCGTCTTGCTGCTCGATCGGATGAGGAATATTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAGTGGGTGTATGCTCCAATTCAAAAGGATGACAAGGCCAAAAGTTTCAGCAGTGGTGTTACTGGAAAGCGAAAAAGAAAAGATGTGGTATATGCTGATACATTGAGTGAGCAACAATGGATGAAGGCTATGGAGAATGGGGGTGACATGTCAAAGGTTTTAGGTAAAGGGAAAAGAAGAGAGTCAAGAGAATATCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATCCAGGGGCAGATGAAAGCTTATTTGGGTCAAGGACTGAAGTTGCCCCCATGGAAAATGAAGATAGTTTCCATACCTCTCCTTCCTCAAATAGATTCAAGCCTGAAAGAACAAAATTTCAGAAACAGGCATACGAGGATGTTGGCGGAAGTGGTCTGAACCAGCATGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGTCATCAAGGCCAGGGGTCATTATCTGATAGTAGAGGACAAAATTCAAATGGAAGAGGAAACTGGAATTGA 2790 0.4054 MMRLRRPFYGVGDPFAMDADDQLRKKRDSEKLSRLEEAEKNHIETTKRRFFAEVLNTVRELQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDFKHSDGIEPLEDSEADLPESDASKNGISKESPVDEDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMISLFNNNLNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPTIKVILYDGRMDERKAIKDEFSGEGKFNVMITHYDLIMRDKAFLKKIKWNYLIVDEGHRLKNHESVLAKTLDNSYNIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGADVPSEREINRLAARSDEEYWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIQKDDKAKSFSSGVTGKRKRKDVVYADTLSEQQWMKAMENGGDMSKVLGKGKRRESREYLSSDSIAQASDNPGADESLFGSRTEVAPMENEDSFHTSPSSNRFKPERTKFQKQAYEDVGGSGLNQHVFSWNTHKKKRSSHQGQGSLSDSRGQNSNGRGNWN* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4793 929 Coils Coil 741 761 - -
Psa6g4793 929 PANTHER ATP-DEPENDENT HELICASE BRM 11 898 - -
Psa6g4793 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 404 IPR014001 -
Psa6g4793 929 SMART ultradead3 222 415 IPR014001 -
Psa6g4793 929 PANTHER SNF2/RAD54 HELICASE FAMILY 11 898 - -
Psa6g4793 929 MobiDBLite consensus disorder prediction 829 844 - -
Psa6g4793 929 Pfam Helicase conserved C-terminal domain 537 650 IPR001650 -
Psa6g4793 929 MobiDBLite consensus disorder prediction 146 179 - -
Psa6g4793 929 Pfam Snf2-ATP coupling, chromatin remodelling complex 744 803 IPR029295 GO:0042393
Psa6g4793 929 MobiDBLite consensus disorder prediction 858 872 - -
Psa6g4793 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 707 IPR001650 -
Psa6g4793 929 CDD SF2_C_SNF 528 661 - -
Psa6g4793 929 Gene3D - 457 758 IPR027417 -
Psa6g4793 929 MobiDBLite consensus disorder prediction 910 929 - -
Psa6g4793 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 451 IPR027417 -
Psa6g4793 929 SMART SnAC_2 743 803 IPR029295 GO:0042393
Psa6g4793 929 Pfam SNF2-related domain 229 517 IPR000330 GO:0005524|GO:0140658
Psa6g4793 929 MobiDBLite consensus disorder prediction 808 929 - -
Psa6g4793 929 MobiDBLite consensus disorder prediction 814 828 - -
Psa6g4793 929 Gene3D - 195 450 IPR038718 -
Psa6g4793 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 704 IPR027417 -
Psa6g4793 929 SMART helicmild6 566 650 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4793 Psa-Chr6 418139123 418149563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4793 533 678 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.48e-20 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g4793 SNF2_N 3.2e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4793 - - gmx:100786280 1636.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4793 6 418139123 418149563 Psa6g4793 6 418139123 418149563 ECH