Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4779 ATGCAAGACTTCTTCGGCTCCATTCGCCGATCCATAGTTTTCTCAACTCCACCCGCACACACCGACGATGGACGCTTCACCGGATTCGCCAACAAGATCGGCTCTGCCATTCGCAAATCCAGAATCGGCCTCAAGTCTCCTCCTCCACCTCCTCCTCCGCATATTAGGTGGCGTAAGGGTGAGTTGATTGGTTCCGGTGCATTCGGTCGAGTTTATATGGGTATGAACCTCGACTCCGGGGAGCTTATTGCCGTCAAACAGGTTTTGATCGAGCCTGGTATTGCTTTCAAGGCGAATACACAGGCTAATATTCGGGAGCTCGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATCCGAACATTGTTAGATACTTGGGAACTGCTAGAGAGGAAGATTCCTTAAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCATCACTGTTGGGGAAGTTCGGATCCTTTCCTGAGTCCGTTATAAGAACCTACACAAAACAGCTTTTAGAGGGGCTTGAATATCTTCACAATAACAGAATTATTCACCGGGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGTATTAAACTCGCAGACTTTGGTGCATCCAGGAAAGTCGTGGAATTGGCTACCATAAATGGAGCAAAGTCTATGAAGGGTACCCCACACTGGATGTCACCTGAAGTTATTTTACAGACAGGATATACAACCTCTGCTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGTCAACAGTATCCCCAGGAGGTGTCAGCTCTTTTCTACATTGGGACAACTAGATCTCATCCACCAATACCCGAACATCTGTCTGCTGAGGCAAAGGACTTTTTGCTGAAATGCTTTCACAAGGAACCGGATTTAAGACCTTCTGCATCAGACTTGTTACTGCATCCATTCATCACATGCGAGTATCAGGAATCTCATTCAATATCACGCAGTTCAGTCAGGGACTCTTGCAATCGGATAGCAACAGATGGGATGAACTCTAGGAACTTTTTGGATTCTATCCAAGGATCAACGTGTACAGGCCTAAAGGATGTTTGTCAGATGGATAGTTTAAGGTTCTCGAATGCAAATCTTCTAAAACCAGGTTCCTACCAGGGAGCAGGCAACTATGACGATGACATGTGTCAGATGGATGATGATGATGATATTTTCGCTGCATCATCAGTAAAAGCTAACTCCCTACTTGCTGCTGACGACATAAAGAGTTTCAATCCAATGTGCGAACCTGTGGAGGATGGCTGGTCTTGCAAGTCAGACGAAACACTAAATTTGAAGAAAAGCAGACTGAACTTGTACCCAGATCAAACTATTAGGATAACTATGAGTCCCAAACCATCTCCTAATGCAGAGAAGGAGTTTTCATTTTCAAGTGAACCTCTTGGAGTTGAAGATGATGATGAAGTGACAGAGTGCAAAATTAGAGCTTTCCTGGATGACAAGGCATTCGAACTGAATAAGCTCCAAACACCTCTTTATGAAGAATTCTTTGGCAAATCAATTGCAGCCATTCCTCCTGTACCTGTTGAAGTTGCACATAGTAAAGTTATTTCAGATGTCTCAAACGTAAAATCAAAAAGCAGGTCTCCTAGTCAAGATAGACGGAGATTCTCAATGGCTGGCATTGCCAATGTAACAAGCCCAGAGAGTCATAGAAAATATCTTACAAAACCTGTGACTGCTCATTGTAGACCTTTGCAGGAAATTCAACCTTCTGAGCTTTATGATTCAAAGGAGACTCTTCGTGATGCTGAGCAAGGATCAAGTGTCAGCCCAAGCTTCTCCGAGAGACAAAGGAAATGGAAAGAAGAACTTGCAGAAGAGCTTGAGCGGACGCGTGAGGTTATGCGTCAAACAGGTGGGGGGAAGATAACATCCCCAAAGGATCGCAGTTTTCTCAGAGACTGA 1971 0.4424 MQDFFGSIRRSIVFSTPPAHTDDGRFTGFANKIGSAIRKSRIGLKSPPPPPPPHIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIEPGIAFKANTQANIRELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLEGLEYLHNNRIIHRDIKGANILVDNKGCIKLADFGASRKVVELATINGAKSMKGTPHWMSPEVILQTGYTTSADIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTRSHPPIPEHLSAEAKDFLLKCFHKEPDLRPSASDLLLHPFITCEYQESHSISRSSVRDSCNRIATDGMNSRNFLDSIQGSTCTGLKDVCQMDSLRFSNANLLKPGSYQGAGNYDDDMCQMDDDDDIFAASSVKANSLLAADDIKSFNPMCEPVEDGWSCKSDETLNLKKSRLNLYPDQTIRITMSPKPSPNAEKEFSFSSEPLGVEDDDEVTECKIRAFLDDKAFELNKLQTPLYEEFFGKSIAAIPPVPVEVAHSKVISDVSNVKSKSRSPSQDRRRFSMAGIANVTSPESHRKYLTKPVTAHCRPLQEIQPSELYDSKETLRDAEQGSSVSPSFSERQRKWKEELAEELERTREVMRQTGGGKITSPKDRSFLRD* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4779 656 CDD STKc_MAPKKK 56 320 - -
Psa6g4779 656 Pfam Protein kinase domain 58 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4779 656 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 41 555 - -
Psa6g4779 656 MobiDBLite consensus disorder prediction 587 656 - -
Psa6g4779 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Psa6g4779 656 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Psa6g4779 656 Gene3D Transferase(Phosphotransferase) domain 1 56 352 - -
Psa6g4779 656 Coils Coil 97 117 - -
Psa6g4779 656 SUPERFAMILY Protein kinase-like (PK-like) 56 332 IPR011009 -
Psa6g4779 656 ProSiteProfiles Protein kinase domain profile. 57 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4779 656 SMART serkin_6 57 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4779 656 MobiDBLite consensus disorder prediction 617 638 - -
Psa6g4779 656 PANTHER MAP KINASE KINASE KINASE 41 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4779 Psa-Chr6 417385915 417394393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4779 1 646 MAP Kinase Kinase Kinase AT3G06030 55.172 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa6g4779 Pkinase 4.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4779 - K20606 gmx:100795863 879.782