Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4776 ATGAGCAGTTCAAGAACGGATCACACGTTTGATGATGTATTGGCGTATGTAAAGACAGTAAGATTTGTGTTTGAAGATAAGATTGAGAAGTTTGACGAATTTGTTAGACTCATACGTGATTATGAAGCCAGAAGAATTGATGTAGAAGCTGTCAAAGAAGGAGCGATAGAGTTGTTTGAAGAGCACAAAGATTTACTTTCAAGATTCAATATCTTCTTGCCAGGAAACGAAATCTCACTTCCATTGGATGATGAACAACAAGGTGATGATGATGAACTAGCGGCCCAAGATGAAAAACAAGGTGATGATGAGCAGAAAGATAATGATCAACAAGGTGTTGAAGATGCATTTGCGGCCAAAAATGAACAGAAAGATGATGATCAACAAGGTGATGGCGATACATTAGCGGTCAAAGATGATGAACATCAAGGTGATGACTATGCATTAGCAGTCAGTGATGATGATGATGAATTTGCGGCTAAAGATGAACAAAAGGTTGATGAACAAGAAGGTGATCATGATGCATTAGCAGTCAAAGATGAACAAAAAGATGACGAACAACAAGGTGATGCCAATGTATTAATGGTCCAAGATGAACATATTGACGAACAACAACGTGATAACGATGCATTAATGGTCGAACTCGAAGATGAGCGTAATGATGATGCACAACAAGGTGATGACGATGCATTAACAATCAAAGATGAACAACATCAAGGTGATGAGGATGCATTAGCAGTCAAAGATGATCAGAAAAATGATGAGCATCAAGCTGATGATGATGATGATGCATTGGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGCTGATGCATTAGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGGTGATGACTATGCATTAGCAGTCAAAGATGATCAGAAAAATGATGAACATCAAGGTGATGACTATGCATTAGCAGTCAGTGATGATGATGAATTTGCGGCCAAAGATGAACAAGAAAGTGATCATGATGCATTAGCAGTCAAAGATGAACAAAAAGATGACGAACAACAAGGTGATGCCAATGCATTAATGGTCCAAGATGAACATAATGATGAACAACAACGTGATAGCGATGTATTAATGGTCGAACTCGAAGATGAACATAATGATGGTGCACGACAAGGTGACGGCGATGCATTAACAATCAAAGATGAACAACATCAAGGTGATGAGGATGCATTAGTAGTCAAAGATGATCAGAAAAATGATGAACATCAAGCTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGGTGCATTGGCAGCCAAAGATGATCAGAAAAATGATGAACATCAAGCTGATGCATTAGCAGTCAAAGATGAACAGAAAGATGATGAACATATGGGTGATTGTGATGTACTAGCGGTTCAAGACGATGAACACCAAGGTTATGATGGTGCATCAGCGGTCGAAGATAAGCAGAATGATGATGAACATCAAGGTGATGGCGATGCATTAGCGGTCAAAGACGATGAATACCAAGGTGATGATGATGCATTAGAGGTCAAAGATAAACAGAAAGATGATGAAGAAAAACAAGTTTTTTCGATCATGTGA 1620 0.3827 MSSSRTDHTFDDVLAYVKTVRFVFEDKIEKFDEFVRLIRDYEARRIDVEAVKEGAIELFEEHKDLLSRFNIFLPGNEISLPLDDEQQGDDDELAAQDEKQGDDEQKDNDQQGVEDAFAAKNEQKDDDQQGDGDTLAVKDDEHQGDDYALAVSDDDDEFAAKDEQKVDEQEGDHDALAVKDEQKDDEQQGDANVLMVQDEHIDEQQRDNDALMVELEDERNDDAQQGDDDALTIKDEQHQGDEDALAVKDDQKNDEHQADDDDDALAVKDDQKNDEHQADALAVKDDQKNDEHQGDDYALAVKDDQKNDEHQGDDYALAVSDDDEFAAKDEQESDHDALAVKDEQKDDEQQGDANALMVQDEHNDEQQRDSDVLMVELEDEHNDGARQGDGDALTIKDEQHQGDEDALVVKDDQKNDEHQADDDDDDDDDDDDDDDDDDGALAAKDDQKNDEHQADALAVKDEQKDDEHMGDCDVLAVQDDEHQGYDGASAVEDKQNDDEHQGDGDALAVKDDEYQGDDDALEVKDKQKDDEEKQVFSIM* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4776 539 MobiDBLite consensus disorder prediction 99 188 - -
Psa6g4776 539 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Psa6g4776 539 PANTHER SIN3B-RELATED 3 118 IPR039774 GO:0003714
Psa6g4776 539 PANTHER PROTEIN, PUTATIVE-RELATED 3 118 - -
Psa6g4776 539 MobiDBLite consensus disorder prediction 441 539 - -
Psa6g4776 539 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Psa6g4776 539 SUPERFAMILY PAH2 domain 5 74 IPR036600 GO:0006355
Psa6g4776 539 MobiDBLite consensus disorder prediction 87 539 - -
Psa6g4776 539 MobiDBLite consensus disorder prediction 418 440 - -
Psa6g4776 539 MobiDBLite consensus disorder prediction 196 350 - -
Psa6g4776 539 Pfam Paired amphipathic helix repeat 29 73 IPR003822 GO:0006355
Psa6g4776 539 Coils Coil 201 221 - -
Psa6g4776 539 MobiDBLite consensus disorder prediction 358 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4776 Psa-Chr6 417047397 417049113 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g4776 PAH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4776 - - ovi:T265_11692 133.65