Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4775 ATGAGCAGTTCAAGAACGGATTACACGTTTGAGGATGTATTGGCGTATGTAAAGACAGTAAGATTGGTGTTTGAAGATAAGATTGGAAAGTTTGACGAATTTGTCAGACTCATACGTGATTATGAAGCCAGAAGAATTGATCTCGAAGCTGTCAAAGAAGGAGCGATAGAGTTGTTTGAAGATCACAAAGATTTACTTTCAAGATTCAATATCTTCTTGCCAGGAAACGAAATCTCACTTCCATTGGATGATGAACAACAAGGTGATGATGATGAACTAGCGGCCCAAGATGAAAAACAAGGTGATGATGAGCAGAAAGATAATGATCAACAAGGTGTTGACGATGCATTTGCGGCCAAAAATGAACAGAAAGATGATGGTCAACAAGGTGATGGCGATACATTAGCGGTGAAAGATGTTGAACAACAAGGTGATGGCAAAGATGTTGAACAACAAGGTGTTCCTCGTAACTCTAAAATGTTAACCTTGAGGTTCATTCCAATGCCTATCAGAAATCAACCAAATTTTACAATTCGGAACATACATTCGGGAACTAAAGTCTCCGATATGAAGAAATTCCTTGAACTTCACGTGAGAAACGCTGTACCGCGAGACGGCAAATTCTTTTTTATCCACAATCGTCGAGTAATGTATGAGAATCTATCCTTTGAGATGCATGATGCTCGGACTGGTGACAGGATTGAACTATTTGATGGGGTCATCATCGCAGGCGATGATTAG 741 0.3981 MSSSRTDYTFEDVLAYVKTVRLVFEDKIGKFDEFVRLIRDYEARRIDLEAVKEGAIELFEDHKDLLSRFNIFLPGNEISLPLDDEQQGDDDELAAQDEKQGDDEQKDNDQQGVDDAFAAKNEQKDDGQQGDGDTLAVKDVEQQGDGKDVEQQGVPRNSKMLTLRFIPMPIRNQPNFTIRNIHSGTKVSDMKKFLELHVRNAVPRDGKFFFIHNRRVMYENLSFEMHDARTGDRIELFDGVIIAGDD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4775 246 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Psa6g4775 246 SUPERFAMILY PAH2 domain 5 74 IPR036600 GO:0006355
Psa6g4775 246 MobiDBLite consensus disorder prediction 83 98 - -
Psa6g4775 246 PANTHER PROTEIN, PUTATIVE-RELATED 4 104 - -
Psa6g4775 246 MobiDBLite consensus disorder prediction 81 109 - -
Psa6g4775 246 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Psa6g4775 246 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Psa6g4775 246 PANTHER SIN3B-RELATED 4 104 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4775 Psa-Chr6 416926667 416927504 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa6g4775 PAH 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4775 - K03723 mtr:MTR_1g105515 83.1889