Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4770 ATGGAGTTTCAGCGACGCCAAGGTCACTGCCTCTACGAGAGGAAGGGGCAAAAACGGAAGCTAGACGAAGAATCGCAGGACGAACCACAGATCTCGGCGGCGCCGCCTACCTCCGACGAGCGTGCGGCAGTTCTAACTGAAGTGGAAAACCAGGTCAACATCCTCGAGTCGACATTCACGTGGAACGAATCCGACCGAGCAGCGGCAAAGCGAGCTACTCATGCGCTCGCTGATCTCGCGAAGAATGAGGAAGTCGTGAATGTTATTGTGGAAGGAGGTGCTATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTGTGGAGGATTGCGATAAGAAGGCGTTGCCGTTTGAGCACGAAGTTGAGAAAGGAAGTGCTTTCGCGCTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTAATTGTTGACAGTGGTGCCTTAACTTACCTTGTTGGTCTTTTGAAGAGGCATAACCAAGGCTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCTATTACTAATCTTGCACATGAGAATAGCAACATTAAAACCTGTGTCAGGATGGAAGGTGGAATTCCACCACTTATTCATTTGCTCGAGTTTGCCGATACAAAGGTGCAAAGAGCTGCTGCTGGTGCTCTGAGAACCCTAGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAGTGCAATGCTCTTCCGACTCTGATTCTAATGTTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTTCACTCTTCTCCTACTATAAAGAAAGAGGTTCTTTTTGCTGGTGCTCTACAACCAGTTATTGGATTACTTAGCTCCTGCTGCTCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTTCGTCTTCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCACTAGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCACACAGTGGTGGCTTAGTGCCACTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGAGTTCAAAGACTACAGGAAGGAGAGTTTATTGTTCAAGCGACTAAAGATTGTGTTTCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGCTGAGCCATCTATTATATCTCATGCGTGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCTTTAGTTCTTGCGCATCTTTGTTCTGCAGACGATCAAAGAAGAATTTTTATTGAACACCATGGTCTTGAGTTGCTTATTGGGCTTCTTTGCTCATCTAGCACCAAGCAGCAGCTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCGATAAAGCATCAACTCTGTCTCCTGTAGACGCTCCTCCTCCTTCTCCAACACCACAGGTCTACTTAGGAGAGAAGTTTGTAAACAATGCTACACTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCCAGATATTGCTCAAGACCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTAAAGAGACTCTGTGAGTATACAATTGCACAGGATATATTACTAGAGAATGTGTCGAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATTCTTTTTATCTTGAAGCACTTTGATAAGTTGAGCACAAGGCCAGGGCACTCTCTTCTGATTCAGCAAACAATTCCAGAGATCCGCAATTACTTTGTTAACGCTCTTACAAATGCGAACTCCCAAAGACAGTAA 2115 0.4421 MEFQRRQGHCLYERKGQKRKLDEESQDEPQISAAPPTSDERAAVLTEVENQVNILESTFTWNESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPVEDCDKKALPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTYLVGLLKRHNQGLTSRAINSLIRRAADAITNLAHENSNIKTCVRMEGGIPPLIHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPTIKKEVLFAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLSSSDVQLREMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVSDFIRVGGVQRLQEGEFIVQATKDCVSKTLKRLEEKIHGRVLSHLLYLMRVSERGFQRRIALVLAHLCSADDQRRIFIEHHGLELLIGLLCSSSTKQQLDGAVALCKLADKASTLSPVDAPPPSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDIAQDLLRAADQYLLEGLKRLCEYTIAQDILLENVSSMYELSEAFNAISLRHACILFILKHFDKLSTRPGHSLLIQQTIPEIRNYFVNALTNANSQRQ* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4770 704 Gene3D Potassium Channel Kv1.1; Chain A 520 668 IPR011333 -
Psa6g4770 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 265 IPR000225 GO:0005515
Psa6g4770 704 SUPERFAMILY ARM repeat 65 496 IPR016024 -
Psa6g4770 704 SUPERFAMILY POZ domain 531 633 IPR011333 -
Psa6g4770 704 SMART arm_5 352 392 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 227 267 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 311 351 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 269 309 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 185 225 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 135 183 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 82 134 IPR000225 GO:0005515
Psa6g4770 704 SMART arm_5 467 507 IPR000225 GO:0005515
Psa6g4770 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 147 IPR000225 GO:0005515
Psa6g4770 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Psa6g4770 704 Pfam BTB/POZ domain 533 634 IPR000210 GO:0005515
Psa6g4770 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Psa6g4770 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 9 702 - -
Psa6g4770 704 Gene3D - 273 515 IPR011989 -
Psa6g4770 704 Gene3D - 36 166 IPR011989 -
Psa6g4770 704 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Psa6g4770 704 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Psa6g4770 704 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Psa6g4770 704 Pfam Armadillo/beta-catenin-like repeat 189 224 IPR000225 GO:0005515
Psa6g4770 704 SMART BTB_4 539 636 IPR000210 GO:0005515
Psa6g4770 704 MobiDBLite consensus disorder prediction 1 27 - -
Psa6g4770 704 Gene3D - 167 272 IPR011989 -
Psa6g4770 704 CDD BTB_POZ_ARIA_plant 526 641 - -
Psa6g4770 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 9 702 IPR044282 -
Psa6g4770 704 MobiDBLite consensus disorder prediction 1 39 - -
Psa6g4770 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Psa6g4770 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4770 Psa-Chr6 416772423 416783900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4770 198 480 U-box Gene Family AT3G46510 26.502 5.24e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa6g4770 BTB 3.8e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4770 - - gmx:100784348 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4770 6 416772423 416783900 Psa6g4770 6 416772423 416783900 ECH