Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4717 ATGGCACAATTCATTTGGGATCTTGAATCCGTGTTTCCAACTTTAGAAGATGTAAATTTAGAAATCAAATGGAGACATAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGGAAATCATCACTTTTGTATGCAATAATTGGAGAAATTCATAAGATATCAGGAACTATTAATGTAGGTGGCACTTTTGCCTATGTTTCCCAATCTTCATGGATACTAAGTGGAACAGTTCAAGATAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCTTGTGCTTTAGATAAGGATATCAATGATTTTAGCCATGGTGATTTTACAGAAATTGGTCAGAGAGGGATAAACATGAGTGGAGGACAGAAACAAAGGATTCAACTAGCTAGAGCAGTCTATAATGATGCTGATATCTATCTCCTTGATGATCCTTTCAGTGCAGTTGATGCACATCAGCTGCAATACTATTCAATGGAAGATTGTGTCATGACTGCTTTAAGAGAGAAAACTGTTATTCTAGTTACACATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAGTCTCCTAACAGCAGGAACAGCCTTTGAAATACTTGTGAGTGCTCATAAAGACACAATTACTGAGTTGAATCAAGATAATGAACATAAAAGAGGTTTTGAAAACGAAGTTTTGTCTAATCCTCAAAACTCTCAAGGTTTTTATCTCACTAAAAATCAGAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAATTGGTGCGCAACTTACACAAGAGGAAGAAAAAGTTATTGGTAATGTTGGATGGAAGCCATTTTGGGATTATATTAATTATTCCGAAGGGACATTCATGTTGTGTTTCATCCTGTTAGCAAAGTGTGGTTTCATGGCTTTTCAAACTGCATCAACCTTCTGGCTTGCTATAGCCATAGAAATTTCAAAAGTAACTAATGCCACCTTGATTGGAGTTTATACATTAGTTTCTTTTGCTAGTGCTGCTTTTGTATATGTAAGGTCTTACTTGGCTACACTTCTTGGATTAAAAGCTTCTACTGCTTTCTTCTCAAAATTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACTCCTGTAGGAAGGATTTTAACTAGAGCTTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACCATTGTAGCAAGTTTAGCACTTGAAATTTTGGTGATAATTTGTATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGAAATGGTTGCATCAATATACATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATACGGATCAATGGAACAACCAAAGCTCCAGTCATGAATTTTGCATCCGAGACATCAGTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAAAAACTACTTAACACTTGTAGACACAGATGCTTCATTGTTCTTTCATTCCAATGCGGCAATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAATTTGACTGTCGTCACTGCATCTTTGTTGATTATTCTACTTCCTCATGGATATGTATCCCCAGGTCTTGTGGGGCTGTCTCTTTCTTATGCTTTTACCTTGACCTCAACCCAAATATTTTGGAGTAGATGGTTTTCCAACTTATCCAACAATATTATATCTATTGAAAGAATCAAACAATTCATTCATATACCAGTTGAGCCTCATGCTATTGTGGATAATAACCGGCCACCATCTTTGTGGCCTTCCAAGGGAACGATTGATCTTCAAGACTTGGAGATCAGATATCGTCCTAATGCTCCATTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTAGGAGTTGTCGGAAGGACTGGAAGTGGAAAAAGTACACTGATTAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTCTCATAGATGGGTTGAACATTTGCTCAATGGGGTTGAAGGATTTGAGAATGAAGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTGGACCCTCTTGGCCTGTACTCAGACGATGATATCTGGAAGGCTGTAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAACGCCGATTGTTTTGTCTTGGAAGGGTTTTACTTAAGAGAAACAGAATTCTTGTTCTGGATGAAGCTACTGCCTCCATTGACTCTGCTACAGATGCCATTTTACAAAGAGTAATCAGAGAGGAATTTGAAGAATGCACAGTCATAACCGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGATTATGGTTTTATCTTATGGGAAACTGATGGAATACGATGAACCTTCAAAGCTAATGGATACAAACTCTTCATTCTCTAAGCTGGTTGTTGAATATTGGTCCAGTTGCAGGAAAAATTCATTCCCAAATATTATCAGACAACAACAATGA 2613 0.3789 MAQFIWDLESVFPTLEDVNLEIKWRHKIAVCGPVGAGKSSLLYAIIGEIHKISGTINVGGTFAYVSQSSWILSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDFTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHQLQYYSMEDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYESLLTAGTAFEILVSAHKDTITELNQDNEHKRGFENEVLSNPQNSQGFYLTKNQSEGEISSIKGPIGAQLTQEEEKVIGNVGWKPFWDYINYSEGTFMLCFILLAKCGFMAFQTASTFWLAIAIEISKVTNATLIGVYTLVSFASAAFVYVRSYLATLLGLKASTAFFSKFTTAIFNAPMLFFDSTPVGRILTRASSDLSILDFDIPYSITIVASLALEILVIICIMVSVTWQVLIVAVPEMVASIYIQQYYQATARELIRINGTTKAPVMNFASETSVGVVTVRAFNMVDRFFKNYLTLVDTDASLFFHSNAAMEWVVLRIEALQNLTVVTASLLIILLPHGYVSPGLVGLSLSYAFTLTSTQIFWSRWFSNLSNNIISIERIKQFIHIPVEPHAIVDNNRPPSLWPSKGTIDLQDLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGDILIDGLNICSMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDDIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRRLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIREEFEECTVITVAHRVPTVIDSDMIMVLSYGKLMEYDEPSKLMDTNSSFSKLVVEYWSSCRKNSFPNIIRQQQ* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4717 870 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 852 IPR003439 GO:0005524
Psa6g4717 870 Gene3D - 3 243 IPR027417 -
Psa6g4717 870 CDD ABC_6TM_ABCC_D2 300 593 IPR044726 GO:0140359
Psa6g4717 870 Gene3D ABC transporter type 1, transmembrane domain 271 599 IPR036640 GO:0005524|GO:0016021
Psa6g4717 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 850 IPR027417 -
Psa6g4717 870 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 3 863 - -
Psa6g4717 870 Pfam ABC transporter transmembrane region 303 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g4717 870 Pfam ABC transporter 15 149 IPR003439 GO:0005524
Psa6g4717 870 Pfam ABC transporter 635 783 IPR003439 GO:0005524
Psa6g4717 870 CDD ABCC_MRP_domain1 2 198 - -
Psa6g4717 870 ProSitePatterns ABC transporters family signature. 122 136 IPR017871 GO:0005524
Psa6g4717 870 Gene3D - 601 852 IPR027417 -
Psa6g4717 870 SMART AAA_5 644 836 IPR003593 -
Psa6g4717 870 SMART AAA_5 24 198 IPR003593 -
Psa6g4717 870 CDD ABCC_MRP_domain2 616 836 - -
Psa6g4717 870 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 221 IPR003439 GO:0005524
Psa6g4717 870 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 567 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g4717 870 SUPERFAMILY ABC transporter transmembrane region 290 604 IPR036640 GO:0005524|GO:0016021
Psa6g4717 870 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 863 - -
Psa6g4717 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4717 Psa-Chr6 411979392 411983557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4717 616 850 Calmodulin-binding Proteins AT2G36910 31.120 3.46e-30 127