Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4709 ATGTTCTCTTTCCCTAATAATTTCCCTTCATCTTCATCTTCTTGTTACCCTAATAATAATAATAATACCCTTTCTTTTCTTATAGACAACAACCCTCAAAATAATGATTTTCCAAGTCTTCTTGATGATCCACTTTCTTCTCTTCCTTTCACTACATCAACAACACATCATCATGATGTTGTTGTTCCTTTATTCCATGATCATGAAACAACAACTCTTGCTTCTAATTTGGCTGTTTCTGATTATCACAACAACAACAGTTCAATGTTTGAGCCTCCAGATTCTTCAAACTTTGGTGGTTTTCCTAATTTTCTTGTGAAGCAGAAACAACCGTCGGTGATTGTTGGAAAGAAAGATAGGCACAGTAAGATTCACACATCACAGGGTTTGAGAGATAGAAGGGTAAGATTGTCAAGTGAAATCGCTAGAAAGTTCTTTGATCTTCAAGATATGTTGGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCAATAAATCTGATACCGCAATCAAAGAACTCGCCAGAACTAAAAACGCGTGTTACAACAATAACAACAACGACAACAACATCAACAACAACAACGCGTTTTTTGAATCGAATAGCAACAAATCGTTCTCCGGCGGTGGAGCCGACGGCGGTTGTTCGAAGGGGAGAAAACTGAAATGGACACAGAAAGAAGAAACAAAGAAAGAGTCAAGAGAAAGAGCACGAGCAAGAGCAAGAGAAAGGACTTGCTACAAGATGTGTAGCAGCGGAAGAATGCAGGAAGAAATTAGGTACTCTTCCATCGCAGATTCAACTGCAAATGCTCAAATGTTGCAACAATTGATGTCATCAACATCATCTCCGGTGGATAGTACTGAAACCGAGGCTTATGCGAGATGGCGTCATCTTCTTCAGCTGCAAACCTATAACAATCCTTCCTACAGTCACAATCATCATCATACCCTAATGGATTGTGAAATACCTAGAGATCATAGCGGATTCAATTTGATTGAAGAATCTATCATGATAAAAAGGAACATGATGTCGTCTTCTTCTTCGTCTTCATCTCATTATCAACATCATCAACAAAACCTAATTCCTAATATCCCTAAGGAATTACCAAGTTTCAACAACAATACTAATGATTACTCTTTATTCCCTTATTCAACTTCAAATTGGGAGAATAATAATGGAGGATGCTCCAACTTTTGTGGAATAGCCACCATGAATCTATCTTCATGCTTCATGAATCAGTGA 1248 0.3782 MFSFPNNFPSSSSSCYPNNNNNTLSFLIDNNPQNNDFPSLLDDPLSSLPFTTSTTHHHDVVVPLFHDHETTTLASNLAVSDYHNNNSSMFEPPDSSNFGGFPNFLVKQKQPSVIVGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFNKSDTAIKELARTKNACYNNNNNDNNINNNNAFFESNSNKSFSGGGADGGCSKGRKLKWTQKEETKKESRERARARARERTCYKMCSSGRMQEEIRYSSIADSTANAQMLQQLMSSTSSPVDSTETEAYARWRHLLQLQTYNNPSYSHNHHHTLMDCEIPRDHSGFNLIEESIMIKRNMMSSSSSSSSHYQHHQQNLIPNIPKELPSFNNNTNDYSLFPYSTSNWENNNGGCSNFCGIATMNLSSCFMNQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4709 415 MobiDBLite consensus disorder prediction 220 238 - -
Psa6g4709 415 Pfam TCP family transcription factor 116 252 IPR017887 -
Psa6g4709 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 284 IPR005333 GO:0003700
Psa6g4709 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 313 411 IPR005333 GO:0003700
Psa6g4709 415 ProSiteProfiles R domain profile. 232 249 IPR017888 -
Psa6g4709 415 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 313 411 - -
Psa6g4709 415 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 24 284 - -
Psa6g4709 415 MobiDBLite consensus disorder prediction 209 238 - -
Psa6g4709 415 ProSiteProfiles TCP domain profile. 117 175 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4709 Psa-Chr6 409709963 409712213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4709 115 251 TCP Transcription Factor Family AT1G67260 45.752 5.87e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa6g4709 TCP 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4709 - - mtr:MTR_1g103380 438.343