Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4701 ATGGAATCCCCTTATCATTATTTCACACCAATTCTCATCTTTTTCATTCTCATTATATTCTCCATCAACCCCTCACACCAAGCTCTCCCACCACTCAACCCAAGACTCATCAAAGCCCACACAGCACTCCAAGCATGGAAACAAACCTTCACCTCTGACCCTAAAAACTTCACCTCAAACTGGTATGGCCCCAATGTCTGCAACTACACAGGTATCTACTGTGCACCCTCCCCACAAGATCCCTACATCTACACCGTTGCTGGCATAGACATAAACCATGCCAACATAGCAGGTTCATTGCCAGAAGAGCTAGGTCTTTTAACAGACCTAGCTCTCTTCCACATTAACACAAACCGCTTCTATGGCTCCCTTCCAAACACCTTTGACTCTCTCCATTTTCTCCACGAGCTAGACATCAGCAACAACAAACTCTCCGGACCATTCCCGGAAGTTGTTCTTTGCATTCCTTCGTTGAGATTTTTAGACATAAGATTCAACGACTTTCAAGGAAGTGTTCCTGGGAAACTCTTTGATCTCAAACTTGATGCGGTTTTCATCAACAACAATAAGTTTCAATTCTCTTTGCCGGAGAATTTCGGAAACTCTCCGGCTTCTGTCATTGTTTTCGCGAACAATGACATCAAAGGTTGTATTCCGTCGAGTGTGGTGAAAATGAAGGAGACTATTAACGAGATTATTATCGTTAATAGTGGGATGAAAGGTTGTTTACCGGATGAGATTGGTGAGTTGGATAAAGTGACCGTGTTTGATGTTAGTTTTAATGAGTTTGTCGGGGAGTTGCCGGAGAGTATTGGTGGGATGAAGAGTTTGGAACAGTTGAATGTGGCGCATAATAGGTTTTCTGGTTTGGTTCCGGAGAGTGTTTGTAGGTTGCCGAGGTTGGAGAATTTTACGTATTCGTTTAATTATTTCAGCGATGAATCGGAAACTTGTCTTGAGTTGAGAGATAAGGATGATAGGTTGAATTGTATTCCTTTTAGACCGTTGCAAAGGTCGAGATATGAGTGTGATGTTTTTTATAAACATCCTGTTCATTGTACTGGTGTTGGTTGTTCTTTTATAACTCCATCACCTCCTCCTCCTCCTCCACCGCCTCCTCCACCACCTCCTCCGCCACCTCCACCACCACCTCCTCCGCCACCGCCTCCGCCTCCATCACCACCTCCTCCGGAGGTTTACTACCATTATCTATGA 1215 0.4428 MESPYHYFTPILIFFILIIFSINPSHQALPPLNPRLIKAHTALQAWKQTFTSDPKNFTSNWYGPNVCNYTGIYCAPSPQDPYIYTVAGIDINHANIAGSLPEELGLLTDLALFHINTNRFYGSLPNTFDSLHFLHELDISNNKLSGPFPEVVLCIPSLRFLDIRFNDFQGSVPGKLFDLKLDAVFINNNKFQFSLPENFGNSPASVIVFANNDIKGCIPSSVVKMKETINEIIIVNSGMKGCLPDEIGELDKVTVFDVSFNEFVGELPESIGGMKSLEQLNVAHNRFSGLVPESVCRLPRLENFTYSFNYFSDESETCLELRDKDDRLNCIPFRPLQRSRYECDVFYKHPVHCTGVGCSFITPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPPPEVYYHYL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4701 404 Pfam Leucine rich repeat N-terminal domain 41 74 IPR013210 -
Psa6g4701 404 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 24 371 - -
Psa6g4701 404 SUPERFAMILY L domain-like 40 317 - -
Psa6g4701 404 Gene3D Ribonuclease Inhibitor 38 203 IPR032675 -
Psa6g4701 404 Gene3D Ribonuclease Inhibitor 204 326 IPR032675 -
Psa6g4701 404 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 24 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4701 Psa-Chr6 408933125 408935174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4701 22 358 Leucine-rich Repeat extension Gene Families AT3G22800 67.155 7.60e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4701 - - gmx:100818195 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4701 6 408933125 408935174 Psa6g4701 6 408933125 408935174 ECH