Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4700 ATGCAATCGGGAGATGGGGGTAGTAGTACCCCTAAGACGGAATTGGAAGGTGAGGCTTTGAACACAAAGATGAAGAAGAGTGGAAATCTAAGCGGCAAAGATATGATCTTCAGAGCTGATAAAATTGATTTGAAAGCTTTGGATGCTGAGCTCGAAAGGCACATGAGCAGGGCTTATTCCAGAAGTGCCGAGGCAAGGAGGCCTAGAGAAGAGTGGGAGGTTGATTTGGCCAAATTGGATTTACGATATGTTGTTGCGAATGGAGCTTATGGCACTGTCTACAAGGGAACTTATGACAACCAAGCTGTTGCAGTGAAAGTGTTAGACTGGGGCGAGGATGGTGTTGCCAGTGTGAATGAAATTGCTGCCTTACGGGCAGCATTCCGGCAGGAGGTCACTGTTTGGCAAAAACTTAATCATTCAAATGTCACAAAATTTGTTGGAGCTTCTATGGGAACTTCAAATCTTAAGATTCCTTCAGACGCTGGTGGTCAAAATCCCCTTCCTTCCAAGGCGTGTTGCGTTATTGTTGAGTTTGTTCATGGTGGGACATTAAAACAATTCTTGATGAAAAATAGGCGGAAGAAACTTCCATTTAAGGTTGTGGTTCAGTTGGCTTTGGATCTCGCTAGAGGTCTTAGTTATCTACATTCAAAGAAAATTGTTCACCGTGATGTAAAAACTGATAATATGTTGTTGGATGAAAATCAAAAATTGAAAATAGCTGATTTCGGAGTTGCTCGGGTTGAAGCGGTAAATCCAAGTGAAATGACGGGTGAAACTGGAACCGTTGGATACATGGCGCCGGAGGTTATAAATGGTAAGCCATACAACAGAAGCTGCGATGTCTACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGACATGCCTTATCAAAACCTGAGTTTTGCTGACGCGTCGTCTGCCGTTGCTAATAAGAATTTACGACCAGATATTCCTCGATGTTGTCCAAGTGAGTTAGCAACTATAATGAAAACATGCTGGGATAAACATCCAGAAAAGCGTCCACAAATGCAAGAGGTGGTGAGAATGCTGGAAGCACTTGACACAAGCAAAGGAGGTGGAATGGTACCATATGATCAGAGACCATCTTGTTTTTGCTTTAGACGTTTTCGCGGTCCATAA 1152 0.4306 MQSGDGGSSTPKTELEGEALNTKMKKSGNLSGKDMIFRADKIDLKALDAELERHMSRAYSRSAEARRPREEWEVDLAKLDLRYVVANGAYGTVYKGTYDNQAVAVKVLDWGEDGVASVNEIAALRAAFRQEVTVWQKLNHSNVTKFVGASMGTSNLKIPSDAGGQNPLPSKACCVIVEFVHGGTLKQFLMKNRRKKLPFKVVVQLALDLARGLSYLHSKKIVHRDVKTDNMLLDENQKLKIADFGVARVEAVNPSEMTGETGTVGYMAPEVINGKPYNRSCDVYSFGICLWEIYCCDMPYQNLSFADASSAVANKNLRPDIPRCCPSELATIMKTCWDKHPEKRPQMQEVVRMLEALDTSKGGGMVPYDQRPSCFCFRRFRGP* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4700 383 ProSiteProfiles Protein kinase domain profile. 79 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4700 383 PRINTS Tyrosine kinase catalytic domain signature 177 190 IPR001245 GO:0004672|GO:0006468
Psa6g4700 383 PRINTS Tyrosine kinase catalytic domain signature 215 233 IPR001245 GO:0004672|GO:0006468
Psa6g4700 383 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Psa6g4700 383 PRINTS Tyrosine kinase catalytic domain signature 325 347 IPR001245 GO:0004672|GO:0006468
Psa6g4700 383 SMART serkin_6 79 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4700 383 CDD STKc_MAP3K-like 88 354 - -
Psa6g4700 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Psa6g4700 383 Gene3D Phosphorylase Kinase; domain 1 68 161 - -
Psa6g4700 383 Pfam Protein tyrosine and serine/threonine kinase 82 354 IPR001245 GO:0004672|GO:0006468
Psa6g4700 383 SUPERFAMILY Protein kinase-like (PK-like) 62 354 IPR011009 -
Psa6g4700 383 Gene3D Transferase(Phosphotransferase) domain 1 182 363 - -
Psa6g4700 383 PANTHER KINASE-LIKE PROTEIN 12 374 - -
Psa6g4700 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4700 Psa-Chr6 408809568 408813871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4700 1 383 MAP Kinase Kinase Kinase AT3G22750 69.531 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Psa6g4700 PK_Tyr_Ser-Thr 2.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4700 - - gmx:100803917 592.808