Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4675 ATGTGTGTGCAATTTTTCCTAAATATTTTAATGGTTGGCTATATGCAGGATGAAACTTTGCATAATTATCTCACTAATCTGCCTCCTTTAGAGACCAACGAGGATGCTGGAGCTACTTTGAATTCATTTGCCTTTGATTTTTCTCCTACTACATCATATGATGATAACGTCTTATTCAATATCTTATATGATGAATCCATCGTTCCCATAAGGTACTTGTCAAATATTCTTGTTTGTGAGTTATCATATTTAATGTTTTGTTTATTTGATACCTCTCTCTTATTCTTTGTTAGAAATAACCCCTTGGACACATCAATGCCTGAACTTTTTGCTGAGGATGCAAATAAAATACATCCACATGAAGAAGCTGATAATGTAATTCCTACCGAAGATTACTCACCTGACTTATCTTTAATCTCACGTGATGGTTCTATGAAAGATTCAGTTGAGGGTGGAAATTGTATTCAGGAAGTAGGTCAGGTTGAGGCAAACAGTGAACTTCCTGATTGTGAAAATCAAATTCAGAGATGGAATGATGAGGTTTTTCGTACACAGGAGCTCGTTTTAGATAGGCTTGAGAATAGGATGACCATTAACGTAGCAAAATCTGATGAACAGAATGCTAGTAATCAAATCAGTCGGAGTAGTCTCATAATGCCATTTCAGGACCTAACGAATAAAGAGTTGAATCCTCCAAGCTTGAAAAGGAAGATGAATGATCAGATTCATCTGGATGCTTCTTTCTTAACACATGAAAATCAGGAGGAAAGTGCTGATTTCTATCAGAGTATCCCCCAAAAGAAGATGAAAATCCACAACTCAACTCCAACTGGGGAAGGAGGGGCATGCAATAACTGTAAATGTAGAAAATCTCAGTGTTTGAAACTTTATTGTTCGTGCTTTGCTGCTGGAGTTTACTGCACAGGACCTTGCTCATGTCAAAACTGCTTGAATAATCACATTAATGAAGATAAAGTCCTCGAAGCTCGCAAGAAAATTGTGCCTAAGGAGGACCCCAACAAAAGTGGATGCAACTGCAATAAAACAAGCTGCATGAAGAAATATTGTGAATGTTATAAGGCTGGTGTTGGTTGCTCCCCAAGTTGTAACTGTGGAGGATGTGAGAATATACATGGTAGAAAGGATGGTGTGGCTGGAACAAAGTCTTAG 1170 0.3769 MCVQFFLNILMVGYMQDETLHNYLTNLPPLETNEDAGATLNSFAFDFSPTTSYDDNVLFNILYDESIVPIRYLSNILVCELSYLMFCLFDTSLLFFVRNNPLDTSMPELFAEDANKIHPHEEADNVIPTEDYSPDLSLISRDGSMKDSVEGGNCIQEVGQVEANSELPDCENQIQRWNDEVFRTQELVLDRLENRMTINVAKSDEQNASNQISRSSLIMPFQDLTNKELNPPSLKRKMNDQIHLDASFLTHENQEESADFYQSIPQKKMKIHNSTPTGEGGACNNCKCRKSQCLKLYCSCFAAGVYCTGPCSCQNCLNNHINEDKVLEARKKIVPKEDPNKSGCNCNKTSCMKKYCECYKAGVGCSPSCNCGGCENIHGRKDGVAGTKS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4675 389 SMART CXC_2 339 380 IPR033467 -
Psa6g4675 389 SMART CXC_2 281 322 IPR033467 -
Psa6g4675 389 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 341 385 IPR044522 GO:0003700
Psa6g4675 389 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 178 334 IPR044522 GO:0003700
Psa6g4675 389 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 342 376 IPR005172 -
Psa6g4675 389 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 284 319 IPR005172 -
Psa6g4675 389 ProSiteProfiles CRC domain profile. 282 379 IPR005172 -
Psa6g4675 389 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 341 385 - -
Psa6g4675 389 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 178 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4675 Psa-Chr6 406774713 406776434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4675 268 383 CPP Transcription Factor Family AT3G22780 47.917 6.37e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa6g4675 TCR 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4675 - - mtr:MTR_1g103230 176.407