Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4673 ATGCCTGAACTTTTTTCGGAGGATGCAAATAAAATACGTCCACATGAAGAAGCTGATAATGTAATTTCTACCGAAGATTACTCACCTGACTTATCTTTAATCTCAAGTGATGGTTCTATAAAAGATTCAGTTGAGGGTAGAAATTGTATTCAGGAAGTAGGTCAGGTTGAGGCAAACATTGAAGTTCCTGATTGTGAAAATCAAATTCAGAGATGGAATGATGAGGTTTTTCGTACACAGGAGCTCGTTTTAGATAGGCTTGAGAATAGGATGACCATTAACGTAGCAAAATCTGATGAACAAACTGCTAGTAATCAAATCAGTCGGAGTAGTCTCATAATTCCATTTCAGGACCTAACGAATAAACAGTTGAATCCTCCAAGCTTGAAAAGCCACAATTCAAATTCAACCGATGAAGGAGGGGCATGCAATAACTGTAAATGTAGAAAATCTCAGTGTTTGAAACTTTATTGTTCGTGCTTTGCTGCTGGAGTTTACTGCACAGGACCTTGCTCATGTCAAAATTGCTTGAATAATCACATTAATGAAGATAAAGTCCTGGAAGCTCGCAAGAAAATTGTGCCTAAGGTTGTAAGAAGTTCTGATTATTCACCTCAAATAAATTAA 627 0.3684 MPELFSEDANKIRPHEEADNVISTEDYSPDLSLISSDGSIKDSVEGRNCIQEVGQVEANIEVPDCENQIQRWNDEVFRTQELVLDRLENRMTINVAKSDEQTASNQISRSSLIIPFQDLTNKQLNPPSLKSHNSNSTDEGGACNNCKCRKSQCLKLYCSCFAAGVYCTGPCSCQNCLNNHINEDKVLEARKKIVPKVVRSSDYSPQIN* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4673 208 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 106 207 - -
Psa6g4673 208 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 144 179 IPR005172 -
Psa6g4673 208 ProSiteProfiles CRC domain profile. 142 208 IPR005172 -
Psa6g4673 208 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 106 207 IPR044522 GO:0003700
Psa6g4673 208 SMART CXC_2 141 182 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4673 Psa-Chr6 406746475 406747565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4673 134 202 CPP Transcription Factor Family AT3G04850 55.844 3.63e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa6g4673 TCR 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4673 - - mtr:MTR_1g103230 113.235