Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4665 ATGAACATGAATCCTCATCATGGTGGAGTGAAGGATGGATTTGTAGGAGGAAGTTCTTCCTTTTGTATGGTTGATGGTCCTCAACCAATGGAAGGACTTCATGAAAATGGTCCTCCACCATTTCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGCATAGGTAACAACAGCTTTGTTGTGTTGGATCCTCAGGCCTTTTCTGTTAGTCTTCTTCCAAGATTCTTCAAACACAACAATTTCTCTAGTTTTGTCAGGCAACTTAACACATATGGATTTAAAAAGGTTGATCCAGATAAATGGGAATTTGCCAATGAGATGTTTCTAAGAGGACAAAAAATTCTTTTGAAGAACATTAGAAGGAGAAGAGCAAATAAATCACAAGCAATGCAACAACAAGCTCTAGACCCTTCTTGTGTTGAGGTAGGAAGGTTTGGATTAGACGGAATCGAAGTCGATCGGTTACGGCGTGACAGGCATGTTCTAATGGTTGAGTTGATGAAACTCAAACAACAGCAACAGAATACTAGAACTCACCTTGAAGCAATGGAAGGAAGGGTTAAAAGGAACGAACAGAAACAAAAACAGATGATGCATTTCTTGGCAAGAGCCATGCAAAATCCTAATTTCTTGCAACAGTTAGTTCAGAAGAAGGAATGGAGAAAAGAGTTAGGGGAAATGATTTCTATGAAGAGAAGAAGATCTATTGATCAAGGTGGGCCTAGTGATGTTGGAGTTGGGGATGAGTTAGGATATGATGCTGAAGATTGCTTAACTTGTGTTAAAGTTGAACAACATTTTGAGGAGGATACTAATCTGATTAATCAAGTTGAAATTAGAGATAAAGAGATTGATATTGAAGTGTTTTGGAAAGATTGGTTTAATGAAGGTAATGTTGAAGATAAAGATGTAGTAGATGTTGGAGATGTTGATGTATTGGTTGAGCAACTTGGTTATCTTGCTTCTAGTCATAAATAG 1002 0.3723 MNMNPHHGGVKDGFVGGSSSFCMVDGPQPMEGLHENGPPPFLTKTYDIVDDPSTNHIVSWSIGNNSFVVLDPQAFSVSLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQKILLKNIRRRRANKSQAMQQQALDPSCVEVGRFGLDGIEVDRLRRDRHVLMVELMKLKQQQQNTRTHLEAMEGRVKRNEQKQKQMMHFLARAMQNPNFLQQLVQKKEWRKELGEMISMKRRRSIDQGGPSDVGVGDELGYDAEDCLTCVKVEQHFEEDTNLINQVEIRDKEIDIEVFWKDWFNEGNVEDKDVVDVGDVDVLVEQLGYLASSHK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4665 333 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4665 333 Coils Coil 160 194 - -
Psa6g4665 333 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4665 333 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4665 333 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4665 333 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4665 333 SUPERFAMILY "Winged helix" DNA-binding domain 36 130 IPR036390 -
Psa6g4665 333 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 21 296 - -
Psa6g4665 333 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4665 333 Gene3D - 33 131 IPR036388 -
Psa6g4665 333 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 296 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4665 Psa-Chr6 406103605 406105410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4665 27 331 HSF AT3G22830 53.221 2.62e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa6g4665 HSF_DNA-bind 1.5e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4665 6 406103605 406105410 Psa6g4665 6 406103605 406105410 ECH