Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4661 ATGGTAAAACCTAGAGCTATGTACGTGTCATCATCTAAATGGCCCATTCGTTGGGAAGAGCGTATCCAACCGTTAATCCTATTTCACTGTGCAGATAAATACAGAATAGAGGGACCCTCTCTTCCAGACGACAAGTGGGGCTCTTCTCCATTGTTAGGTGCTTCAAAGCTTCAAACCACAGTCAACGTATCAAAACCTCTGCAAAACACACAGATGGAAGTGAATCATAGCGGCGGCGATGGTTTCAGTGAAGAAAAAGATACGCCGGAGACGACGGAGCAACAAACGTTGAATGAGTCGGAGTCTCCGTCGGAGGCGGCGATGAAAGAAGAGCTCTCTGAAACGGGTAATCACAATCATGACGAGTCTCGTTCAATGGATATTATTCCGATTCCGAATCCGATTCCGATGACAATAACAGTTCCGGCGGCTAAGAAGCCGTCGAAGGACCGTCACACGAAGGTGGAGGGACGCGGTCGGAGAATCCGAATGCCGGCCACATGCGCCGCGAGGATCTTCCAGCTGACGCGGGAGCTTGGTCACAAATCCGACGGAGAAACAATACGGTGGTTGCTAGAACAATCCGAGCCTGCCATCATTGAAGCAACAGGCACCGGTACTGTTCCAGCCATCGCTGTTTCCGTCGGCGGGACGCTAAAGATTCCGACATCCTCCGCGGCGAGGCCCGACGGGGAAGACGTACCAAAGAAACGAAGGAGGAGAGCTTCAAACAGTGAATTTGTTGACTTGAACGAACACGCTTCAATCTGTTCAGGACTGGCCCCAATAACTCAAACCGCTTACGGCGGCGGAGGTGGCGGTGGTGGTGAAAACGGTGGTGGTGGTGGTCTAGTTCCGTTATGGCCCGTGGTGAGTAATGGAGGGTCCAATACAACAGGGCCATTTTTCATGTTCCCAAATTCAACTATGAATCAGCCACAGTTTTGGGCTATTCCTGCGGCGCCGTTTTTTAATGGACCCATTTCAGATTTTGTTTCTACTCTGCAAATGCAAAATCAACTTTCAAATGCTAATGGTTCATCTTCATCTACTCTGGCTCCTAGTTTGAGCTCAGCTTCTACATCAACTTGTTCTTCTGCAGTTACTTCTTCATCTTCTGCTGGACCCACTCAAATGCTCAGAGATTTTTCATTGGAAGTTTATGACAAGAAAGAGCTTCAGTTTATGGGTTGTTCTTCTGCAAATTTAGACTCACCTCCCACTTCAAAGCCTTCAAATTAA 1242 0.4847 MVKPRAMYVSSSKWPIRWEERIQPLILFHCADKYRIEGPSLPDDKWGSSPLLGASKLQTTVNVSKPLQNTQMEVNHSGGDGFSEEKDTPETTEQQTLNESESPSEAAMKEELSETGNHNHDESRSMDIIPIPNPIPMTITVPAAKKPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQSEPAIIEATGTGTVPAIAVSVGGTLKIPTSSAARPDGEDVPKKRRRRASNSEFVDLNEHASICSGLAPITQTAYGGGGGGGGENGGGGGLVPLWPVVSNGGSNTTGPFFMFPNSTMNQPQFWAIPAAPFFNGPISDFVSTLQMQNQLSNANGSSSSTLAPSLSSASTSTCSSAVTSSSSAGPTQMLRDFSLEVYDKKELQFMGCSSANLDSPPTSKPSN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4661 413 Pfam TCP family transcription factor 148 227 IPR017887 -
Psa6g4661 413 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 86 407 - -
Psa6g4661 413 MobiDBLite consensus disorder prediction 104 125 - -
Psa6g4661 413 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 86 407 IPR005333 GO:0003700
Psa6g4661 413 MobiDBLite consensus disorder prediction 64 125 - -
Psa6g4661 413 ProSiteProfiles TCP domain profile. 148 202 IPR017887 -
Psa6g4661 413 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4661 Psa-Chr6 405824125 405825895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4661 140 396 TCP Transcription Factor Family AT5G51910 53.506 2.29e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa6g4661 TCP 8.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4661 - - cam:101514016 432.18