Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4657 ATGACGACCACCAATGGGGATGAGAATGAGAATAGTTTGGAACTGGTAGAGCCTAAAGGTTCCAGAGAGGATAAAGAAAAGAACAAGAGGAAGAAAAAAGCTAAATCTATAGAGTCTCTAGGGATGGAAAAGAAGGTGGAGGATCACAATGCGGTTTCGAAATTTAAGATATCCGAGCCGTTGAGAGAAAAGTTAAAGGAAAAGGGAATTGAGTCATTGTTTCCTATTCAGGCAATGACTTTTGATACCATTCTTCATGGTTTTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCAATAATAGAATCTATAACAAACGGTCCGGCAAAAGCATCAAGAAAGACTGGCGATGGGAGGCCACCTAGTGTTCTTGTGCTTTTACCTACTAGGGAATTGGCCTGTCAGGTGAATGCTGATTTTGAGGTTTATGGCGCGGCAATGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTTCTTATCAAGCTCAAGAGATTAAGCTTAAGAAAGGAGTCGATATTGTCATTGGTACACCGGGACGCGTAAAGGATCATATAGAGCGGGGGAAGATTGACCTGAGCCAGCTAAAGTTTCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTTTTGAAGATGTTGAACTGATCCTTGGTAAGGTTAAAAATGTAGGTAAAGTTCAGACGCTGCTTTTCAGCGCGACTTTGCCAGACTGGGTTAAGCATATTGCTAAAAAATTTCTTAAGCCAGATAAGGAAACTGCAGATCTTGTTGGCGATACGAAAATGAAGGCCAGTACCAGTGTTAGGCATATTATTCTTCCTTGTACTGGCTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCTCTTTTACAGCAGTGGAGGTCGAACAATTATATTCACGGAGACAAAGGAGTCGGCTTCTCAGCTCGCAGAGTTGTTGCCTGGAGCAAAAGCACTCCACGGCGACATACAGCAAGCACAGCGTGAGGTTACTTTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTTGCGACTAACGTGGCTGCACGGGGTTTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGATGTTGAAGCCTATATCCATCGTTCCGGGCGCACGGGAAGAGCAGGTAACACTGGAGTTTCTGTAATGCTATATGATCCAAGGAGGTCGAATATATCTAAAATAGAGAGAGAGTCGGGTGTTAAATTCGAACATGTATCTGCCCCTCAGGCTAATGATATTGCCAAAGCTATTGGTGCAGAAGCTGCAGAAATGATAACTCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCTGCCGAGGATCTTTTAAATAACTCTGGTTTATCCGTCGTTGATTTACTTGCAAAGGCTCTTGCGAAGGCTGTTGGTTATACAGAGATCAAGAAAAGATCTCTATTAACTTCTATGGAGAACTATGTTACATTACTTCTTGATACCGGGAGACCTATCTTTACCCCAACTTTTGCATACAAAATGTTGAGGAGGTTTTTGCCGGAAGAGAAGGTTGAGGCTGTGAAAAGTCTTACTATAACTGCAGATGGAAATGGTGTTGTTTTTGATGTATTAGCTGAAGATTTAGATACATATCTTGCTGGTAAGAAAAACGCCTCAGATATAAGTTTAGAGGTGTTAAACGCTTTGCCACGTCTGCAACAGAGAGATCAATCAAGAGGCGGCAGATTTGGAGATGGCAATGGTCGCGGTGGGAGAATTGGTGGTGGCGGAAGGAATGGTAGATTTTCAAGTGATAGGTTTGCGAACGGTGGTGGTAGAGGTCGTGGTAACTGGGGTGGGAAAAGATGGTGA 1890 0.4323 MTTTNGDENENSLELVEPKGSREDKEKNKRKKKAKSIESLGMEKKVEDHNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDTILHGFDLVGRARTGQGKTLAFVLPIIESITNGPAKASRKTGDGRPPSVLVLLPTRELACQVNADFEVYGAAMGLTSCCLYGGASYQAQEIKLKKGVDIVIGTPGRVKDHIERGKIDLSQLKFRVLDEADEMLRMGFFEDVELILGKVKNVGKVQTLLFSATLPDWVKHIAKKFLKPDKETADLVGDTKMKASTSVRHIILPCTGSARSQLIPDIILFYSSGGRTIIFTETKESASQLAELLPGAKALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVSVMLYDPRRSNISKIERESGVKFEHVSAPQANDIAKAIGAEAAEMITQVSDSVIPAFKSAAEDLLNNSGLSVVDLLAKALAKAVGYTEIKKRSLLTSMENYVTLLLDTGRPIFTPTFAYKMLRRFLPEEKVEAVKSLTITADGNGVVFDVLAEDLDTYLAGKKNASDISLEVLNALPRLQQRDQSRGGRFGDGNGRGGRIGGGGRNGRFSSDRFANGGGRGRGNWGGKRW* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4657 629 SMART ultradead3 69 281 IPR014001 -
Psa6g4657 629 SMART helicmild6 318 395 IPR001650 -
Psa6g4657 629 MobiDBLite consensus disorder prediction 1 42 - -
Psa6g4657 629 MobiDBLite consensus disorder prediction 582 629 - -
Psa6g4657 629 Gene3D - 14 263 IPR027417 -
Psa6g4657 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 263 IPR014001 -
Psa6g4657 629 Gene3D - 502 573 - -
Psa6g4657 629 Pfam GUCT (NUC152) domain 484 579 IPR012562 GO:0003723|GO:0004386|GO:0005524
Psa6g4657 629 Gene3D - 287 501 IPR027417 -
Psa6g4657 629 Pfam Helicase conserved C-terminal domain 300 395 IPR001650 -
Psa6g4657 629 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
Psa6g4657 629 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 607 - -
Psa6g4657 629 CDD GUCT_RH7_like 491 576 - -
Psa6g4657 629 CDD SF2_C_DEAD 278 404 - -
Psa6g4657 629 Pfam DEAD/DEAH box helicase 74 251 IPR011545 GO:0003676|GO:0005524
Psa6g4657 629 CDD DEADc 61 258 - -
Psa6g4657 629 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 6 607 - -
Psa6g4657 629 SUPERFAMILY RNA-binding domain, RBD 488 571 IPR035979 GO:0003676
Psa6g4657 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 407 IPR027417 -
Psa6g4657 629 MobiDBLite consensus disorder prediction 12 42 - -
Psa6g4657 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 434 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4657 Psa-Chr6 404704669 404708825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4657 46 401 Eukaryotic Initiation Factors Gene Family AT3G19760 29.834 2.69e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4657 K16911 - gmx:100820207 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4657 6 404704669 404708825 Psa6g4657 6 404704669 404708825 ECH