Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4644 ATGCCTGTGAGGCAGATGAAAGAAAGCTCAGAGCAACACATTGTGATCAAAACCAATTTACACAATTCTAAGAATGCTTCAGCACCATCTTCAGAACAAAACCATACACACACTTCACTTCAACCAAGGAACAAAGGAAGAAGAAGAGGAAGAGGTGGTAGAAAATCTGATCAAGAAGAAATTTTGATGAGACCATGTACTGTAACAACAACAAGTAGTTCTTCCAATGGAAATGTTGGTTTTCCTAGTTCAAGCAGGTCTTTGAACTTTGCTACCAGACCTGGATTTGGAACAGTTGGGACAAAATGCATTGTGAAGGCTAATCACTTCTTTGCACAGTTACCAGACAAGGACTTAAACCAATATGATGTTACTATTACTCCTGAGGTGTCATCAAGAACAGTAAACAGATCCATTATAGCTGAGCTTGTGAGATTGTATAAAGACTCTGACTTAGGGATGAGGCTTCCTGCTTATGATGGCAGAAAAAGTCTGTACACTGCAGGCCAACTTCCCTTTTCATCGAAAGATTTTATGATTAAGCTTATAGATCAAGAGGATGGACTTAATTGCCCCAAAAGGGTAAAAGAGTACAGGGTGGTCATTAAGTTTGTTGCTAAAGCAAATTTGCATCATTTGGGGAAGTTTCTAGCCGGTAAGCGTGCCGATGCGCCACAGGAGGCACTTCAAATTCTTGATATTGTACTAAGGGAGCTATCAACTAAGAGGTATTGTCCCATTGGAAGGTCATTCTTTTCGCCCGATATAAGAAAACCACAACGGCTCGGAGAGGGGTTGGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATAGATATGGCGTCTGCTGCATTCATCGAGCCTCTTCCAGTTGTAGAATTTGTTGGGCAGCTATTAGGGAAGGATGTGCTGTCAAGGCCATTGTCGGATGCCGATCGCATCAAGGTTAAGAAAGGTCTTAGAGGAGTTAAAGTTGAAGTAACACATAGAGGAAGTGTAAGAAGAAAATACCGTGTTTCGGGGTTAACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCAACTATGAAGTCGGTAGTTGAATACTTTCAAGAGATGTATGGTTTTACTATTCAATATACTCATCTTCCTTGCCTTCAAGTAGGCAACCAAAAGAAGGCTAACTACTTACCTATGGAGGCATGCAAAATTGTCGAAGGTCAACGTTATACAAAAAGATTAAACGAGAAACAAATTACTTCTCTTTTGAAAGTTACTTGCCAGAGACCTCGCGATCGGGAAAACGACATTTTACAGACCGTTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGAATTAACATCAGTGAGAAACCAGCGTCTGTTGAAGCACGAATTCTTCCTGCCCCTTGGCTTAAATATCACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCATGTTGGCCAGTGGAATATGATGAATAAGAAAATGATTAACGGAATGACTCTTTTGTTAGCAATATTGCCAGACAATAATGGTTCTCTTTATGGTGATCTCAAACGTATTTGCGAAACAGACCTTGGTATAATTTCACAGTGCTGTCTAACAAAGCATGTCTTCAAAATCAGCAAACAGTATCTGGCTAACGTGTCTCTTAAGATAAATGTGAAGATGGGAGGTAGAAACACTGTTCTTCTAGATGCTGTTAGCTACAGAATACCATTAGTTAGCGACATACCGACCATAATTTTTGGAGCAGATGTTACGCATCCTGAAAACGGAGAAGACACTAGCCCCTCAATAGCAGCTGTTGTAGCATCCCAAGATTGGCCTGAAGTGACAAAATATGCTGGCTTAGTGTGTGCTCAAGCTCACAGACAGGAACTTATACAAGATTTATACAAAACATGGCATGATCCTGTTCGCGGCACTGTTAGTGGCGGCATGATAAGAGATTTACTGATTTCCTACAGAAAAGCAACGGGACAAAAGCCTCTACGAATCATATTTTACAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAGTTTTACTCTATGAGTTGGATGCAATCCGGAAGGTTAATGTCCTCAACTGCTTTCTTTTATCATTCATATATTTATATGTTCTTTTCATAGCAAAGTGCACACGATCCGTATCCATTGTTCCTCCAGCATATTATGCTCATTTAGCAGCTTTTCGAGCAAGATTCTATATGGAACCAGAGATGCAAGAGAATGGCTCTACAGCGGATGGTGGCAATTCTAGCCATAGTTCCAAAGGAACAACAACACGAGCAGCTGGAGAATGTGGTGTGAAGCCATTACCAGCTTTGAAAGATAATGTTAAGAGAGTGATGTTTTACTGTTAG 2400 0.4054 MPVRQMKESSEQHIVIKTNLHNSKNASAPSSEQNHTHTSLQPRNKGRRRGRGGRKSDQEEILMRPCTVTTTSSSSNGNVGFPSSSRSLNFATRPGFGTVGTKCIVKANHFFAQLPDKDLNQYDVTITPEVSSRTVNRSIIAELVRLYKDSDLGMRLPAYDGRKSLYTAGQLPFSSKDFMIKLIDQEDGLNCPKRVKEYRVVIKFVAKANLHHLGKFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRKPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKVKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILQTVQHNAYDQDPYAKEFGINISEKPASVEARILPAPWLKYHESGKEKNCLPHVGQWNMMNKKMINGMTLLLAILPDNNGSLYGDLKRICETDLGIISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISYRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKVNVLNCFLLSFIYLYVLFIAKCTRSVSIVPPAYYAHLAAFRARFYMEPEMQENGSTADGGNSSHSSKGTTTRAAGECGVKPLPALKDNVKRVMFYC* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4644 799 ProSiteProfiles PAZ domain profile. 298 412 IPR003100 GO:0005515
Psa6g4644 799 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 513 705 - -
Psa6g4644 799 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 722 798 - -
Psa6g4644 799 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 44 512 - -
Psa6g4644 799 Pfam Argonaute linker 1 domain 246 295 IPR014811 -
Psa6g4644 799 MobiDBLite consensus disorder prediction 63 81 - -
Psa6g4644 799 SMART DUF1785_2 245 297 IPR014811 -
Psa6g4644 799 MobiDBLite consensus disorder prediction 21 40 - -
Psa6g4644 799 Pfam Piwi domain 514 703 IPR003165 GO:0003676
Psa6g4644 799 Pfam N-terminal domain of argonaute 102 236 IPR032474 -
Psa6g4644 799 Gene3D paz domain 291 416 - -
Psa6g4644 799 ProSiteProfiles Piwi domain profile. 513 703 IPR003165 GO:0003676
Psa6g4644 799 Gene3D - 707 799 IPR036397 GO:0003676
Psa6g4644 799 SMART PAZ_2_a_3 302 434 IPR003100 GO:0005515
Psa6g4644 799 Pfam PAZ domain 324 428 IPR003100 GO:0005515
Psa6g4644 799 PANTHER PROTEIN ARGONAUTE 10 722 798 - -
Psa6g4644 799 PANTHER PROTEIN ARGONAUTE 10 513 705 - -
Psa6g4644 799 PANTHER PROTEIN ARGONAUTE 10 44 512 - -
Psa6g4644 799 Gene3D - 476 511 - -
Psa6g4644 799 Gene3D - 512 576 - -
Psa6g4644 799 SUPERFAMILY Ribonuclease H-like 505 750 IPR012337 -
Psa6g4644 799 Pfam Argonaute linker 2 domain 438 484 IPR032472 -
Psa6g4644 799 SUPERFAMILY PAZ domain 292 452 IPR036085 GO:0005515
Psa6g4644 799 SMART Piwi_a_2 513 750 IPR003165 GO:0003676
Psa6g4644 799 MobiDBLite consensus disorder prediction 21 81 - -
Psa6g4644 799 CDD PAZ_argonaute_like 297 411 - -
Psa6g4644 799 Gene3D - 582 706 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4644 Psa-Chr6 404008360 404014152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4644 723 799 Eukaryotic Initiation Factors Gene Family AT5G43810 70.513 1.81e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4644 K11593 - gmx:100816999 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4644 6 404008360 404014152 Psa6g4644 6 404008360 404014152 ECH
Psa2g4271 2 424990793 424993353 Psa6g4644 6 404008360 404014152 PCT