Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4635 ATGTTTCCTTTACAACGATGCAATGAACTGGCAATCCCGTCATCTAATAGTCTCCACCACCACCCACAAAATCACAATATCTCCCAAGATCTGATTCTTGAAGATTGTGATTCTCTTGTTGTTGATTTTTCTCATAAAAAATTGAGTAGCAGCCGGCCACAAAAGGACTTATTTTATTCACCAGGAGTTGATACTACAAATCATTGTAGTAATCTTAATTCTATCAAACATAATAAGAAGAAAATGATTCATAAGGAGATTGAGAAGCAAAGGAGACAAGAAATGACAACCCTTCATGCTTCCCTTAGATCCCTTCTCCCTCTTGAATTCATCAAGGGAAAACGTTCTATATCTGATCAAATGAATGAGGGAGTGAATTACATAAATCACTTGAAGAAGAATATAAAAGAACTAAGTGCAAAAAGGGATGAACTCAAAAGCCATGCATCATGTAGTTTCAGTATCCACAAGAATAATACAACTGTGGGAGTTGAAATTAGTACTAAAGAAGAAGGCGTTCCACTATCTAAGTTGCTGGAACAACTTCTGAAAGAGGGACTTGATGTTGTTAGCTGCTTTTCAATTCAAGTCAATGGCAGATTACTCCACAGTATGCAGTGTGAGGTTGACAATTCCAAGAGTGTAGATCTATCTGAGATAAGAAGGAAATTTTCCAAAATTAATCCATCATTTAATTGTTCCGATCAAGGTTTTAAATAA 720 0.3569 MFPLQRCNELAIPSSNSLHHHPQNHNISQDLILEDCDSLVVDFSHKKLSSSRPQKDLFYSPGVDTTNHCSNLNSIKHNKKKMIHKEIEKQRRQEMTTLHASLRSLLPLEFIKGKRSISDQMNEGVNYINHLKKNIKELSAKRDELKSHASCSFSIHKNNTTVGVEISTKEEGVPLSKLLEQLLKEGLDVVSCFSIQVNGRLLHSMQCEVDNSKSVDLSEIRRKFSKINPSFNCSDQGFK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4635 239 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 233 IPR015660 GO:0003700|GO:0006357
Psa6g4635 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 150 IPR036638 GO:0046983
Psa6g4635 239 Pfam Helix-loop-helix DNA-binding domain 80 132 IPR011598 GO:0046983
Psa6g4635 239 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 233 - -
Psa6g4635 239 Coils Coil 128 148 - -
Psa6g4635 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 131 IPR011598 GO:0046983
Psa6g4635 239 CDD bHLH_AtORG2_like 80 147 - -
Psa6g4635 239 Gene3D - 71 154 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4635 Psa-Chr6 403313256 403315113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4635 65 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25400 41.420 9.73e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g4635 HLH 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4635 - - gmx:100775836 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4635 6 403313256 403315113 Psa6g4635 6 403313256 403315113 ECH