Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4625 ATGTCTGAAGACCAGAATCAGCATAACATATTAAATAGTTTGGTCAATGATGAGAAGAAAATCATTCGTAGAGAAGTTGAAAAACAAAGAAGGATGCAAATGTCTATTCTATGCTCATCACTCCGATCTTCACTTCCTTGTCACCTCATCAAGGAAAAAAGTTCAGTATCAGATAACATAGGTGAGGCTGCAAATTATGTTCAAAATTTGAAGGAGAAGGTTACTGAACTCGGAAAGAAGAGGGATAAACTCAAAGAAATTATTAGTTCAAGTATGATTGAAACTGGAAATATTGAATTATCAGCAGATCCTTCAAATTTGGTGAAGTGTGTCAACATTAACCTAATTCCAGATGGGGTGGAAATTGTTATATGCAGTGGTTTGGAGGATCGCAGTTCCCATTTATCAGATTTAATGAAAATAATACTTCAAGAAGGATGTGATGTTGTTCACTGTGTTACCAACCAAGTTAATGGGAACGAATTTCATACTATTAGGTGTGAGGTGGAAGACATGGCACACCTTGATCTTACTAGGCTGCAAACCAAACTGGATCATGCAATCTTATTGTCAAGATAG 579 0.361 MSEDQNQHNILNSLVNDEKKIIRREVEKQRRMQMSILCSSLRSSLPCHLIKEKSSVSDNIGEAANYVQNLKEKVTELGKKRDKLKEIISSSMIETGNIELSADPSNLVKCVNINLIPDGVEIVICSGLEDRSSHLSDLMKIILQEGCDVVHCVTNQVNGNEFHTIRCEVEDMAHLDLTRLQTKLDHAILLSR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4625 192 Coils Coil 67 87 - -
Psa6g4625 192 Gene3D - 13 95 IPR036638 GO:0046983
Psa6g4625 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
Psa6g4625 192 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 192 - -
Psa6g4625 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 89 IPR036638 GO:0046983
Psa6g4625 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 5 192 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4625 Psa-Chr6 402352570 402353901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4625 16 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 33.526 4.56e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4625 - - ccaj:109790384 227.254