Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4624 ATGGTAGAAGAAAAAGGGTTCGTGCTTTTGCTATATGGTGCTTCCCAACATAAGTTGAGGTTTCTGATGTTTCATACGACGACATTGATGTTTCTCACGATGTTGGTTCTTTCTCCATTTGCATTTTCACTCACTGAAGAAGGACAAGCATTAATGGCAATGAAGTCTTCGTTCAACAACATTGCTGACGTTCTTCTTGACTGGGATGATGTGCATAATGACGACTTTTGTTCATGGCGTGGAGTTTTTTGTGATAATGTCACTCTTACTTTAACAGTGGTTTCTCTGAATTTATCATGCTTGAATCTTGGTGGTGAAATATCGCCAGCAATCGGTGATTTAAGAAACTTGCAATCCATAGATCTTCAAGGGAATAAACTAACTGGTCAAATCCCCGATGAAATTGGGAACTGCGGTGAACTTGTTCATCTGGATTTGTCTGATAATCAGCTCTATGGTGATATACCTTTCTCCGTTTCGAAGCTGAAGCTACTTGAATTTTTGAATTTGAAGAATAATCAGTTGACTGGTCCTATTCCTTCGACTTTATCGCAAATTCCAAATCTCAAGACTATTGATCTTGCTAGAAATAAGTTCATTGGAGAGATACCGAGGCTACTCTATTGGAATGAAGTATTGCAATACCTTGGGTTGCGAGGGAACATGTTGACTGGAATTTTGTCTCCCGACATTTGTCAATTAACTGGTTTATGGTATTTTGATGTCAGAGGCAATAATTTGACTGGTACTATACCAGAGAGCATTGGCAACTGTACAAGTTTTGAAATCTTTGACATATCGTATAATCAGATTACGGGGGAGATTCCGTATAACATTGGATTTCTTCAAGTAGCTACTTTGTCGCTTCAAGGAAATAGGTTAACTGGGAAGATACCGGAAGTGATTGGTTTGATGCAAGCTCTTGCAATTTTGGATTTGAGTGAGAATCTGTTAGTGGGACCGATTCCTCCAATATTAGGAAATCTATCTTTCACCGGCAAACTATATCTTCATGGAAACATGCTTACTGGATCGATACCTCCCGAGCTAGGCAATATGTCTAAACTGAGCTACCTGCAATTGAATGATAATCAACTGGTGGGTGAAATTCCTAATGAGTTTGGGAAGCTTGAACATCTGTTCGAATTGAATCTTGCCAATAATCGTCTTAATGGATCTATTCCACATAACATAAGCTCCTGCACGTCCTTAAATCAGTTTAATGTGCATGGTAATCAGTTAAGCGGTTCTATTCCATTGAGCTTTCGCAACCTCGAGAGTTTGACTTACTTAAATCTCTCTGCGAACAACTTTAAAGGGATTATACCAGTTGAGTTAGGCCGTATCATAAATCTTGATACATTGGACCTATCTAGCAATAATTTTTCCGGTCATGTCCCAGCATCTGTTGGTTCTTTAGAGCATCTTTTGACCTTGAACTTGAGTCGGAACCATCTTGATGGTCCCTTGTCTGCTGAATTCGGGAATCTCAGAAGCATACAGATTATTGATATGTCCTTCAACAATCTGTCGGGTAGCATTCCTCCAGAGATTGGACAGCTGCAGAACCTTGCCTCTCTGATTTTGAACAACAATGATCTGCACGGGAAGATTCCGGAGCAGCTCACCAACTGTTTCAGTCTTTCTTCCATGAACTTTTCTTATAACAACTTCACCGGAGTAGTTCCATCTTCTAAGAACTTCACGCGGTTCCCGGCTGACAGCTTCTTTGGGAATCCTTTATTATGTGGAAATTGGGTAGGATCCATATGCCGTCCATATCTCCCAAAATCAAGAGAGATATTTTCTAGAGTTGCAGTTGCATGTCTCACTCTCGGTATCATCGTGTTACTGGCTATGGTTATTATTGCTATCTATAGATCCATCCAGTCGAAGCAGTTGTTGAAAGCATCTAGCATGTCCGACCTAGTGCCTCCCAAGCTTGTGGTTCTTCATATGGATTTGGCAATACACACTTTGGATGATATAATGAGAAGCACTGAAAATCTCAGTGAGAAATTTATCATAGGTTATGGTGCCTCTAGTACTGTATACAAGTGTGTGTTGAAAAATTCCCGACCGATTGCAGTCAAGCGATTGTACAATCAGCATCCACACAATTTAAGGGAATTCGAAACGGAACTTGTAACGATAGGCAGCATTAGACATAGAAATCTTGTCGTCTTGCATGGCTATGCCCTTACTCCTTATGCAAATCTCCTTTTTTACGAGTACATGGCAAATGGCTCTCTTTGGGATCTTCTACATGGTCCGCTGAAGGTAAAACTTGATTGGGAAACACGGATGAGGATTGCTGTTGGAGCTGCTGAAGGACTTGCTTATCTTCACCATGACTGCAACCCTCGAATTGTTCACAGGGACATTAAGTCTTCAAATATTTTGCTGGATGAAAACTTTGAGGCTCACCTATCTGATTTTGGCACTGCAAAATGCATCCCAGCCACAAAAACTCATGCCTCAACTTATGTCCTTGGAACTATAGGCTATATTGATCCTGAATATGCACGAACTTCTCGGCTGAATGAGAAATCAGATGTATATAGCTTTGGCATTGTTCTGCTAGAGCTACTCACTGGGAAGAAGGCAGTGGATAATGATTCCAATTTGCATCAATTGATATTGTCCAAGGCTGATAATAACACTGTAATGGAAGCGGTGGATCCTGAGGTATCCGTTACCTGCGTTGATTTGGCTCATGTCAAAAAGACCTTTCAACTTGCTTTGCTATGCACAAAAAAGAACCCTTCCGAGAGGCCTACCATGCATGAAGTAACAAGGGTACTAATTTCACTTCTTCCCGCACCTCCAAGTAAAGTCATTGCAGCTACGGGGAAGAGTTTCGACTATGCTCCTTTCGTGGTTGACAAGGGACAGCACCACCGAAAATTGGATGGACTACAACCTCAGCGCGATAACAATTCTTCTAATGCTCAATGGTTTGTTCGATTCGGAGATGCTATATCCAAGGATTCCCTTTGA 3000 0.4103 MVEEKGFVLLLYGASQHKLRFLMFHTTTLMFLTMLVLSPFAFSLTEEGQALMAMKSSFNNIADVLLDWDDVHNDDFCSWRGVFCDNVTLTLTVVSLNLSCLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGELVHLDLSDNQLYGDIPFSVSKLKLLEFLNLKNNQLTGPIPSTLSQIPNLKTIDLARNKFIGEIPRLLYWNEVLQYLGLRGNMLTGILSPDICQLTGLWYFDVRGNNLTGTIPESIGNCTSFEIFDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENLLVGPIPPILGNLSFTGKLYLHGNMLTGSIPPELGNMSKLSYLQLNDNQLVGEIPNEFGKLEHLFELNLANNRLNGSIPHNISSCTSLNQFNVHGNQLSGSIPLSFRNLESLTYLNLSANNFKGIIPVELGRIINLDTLDLSSNNFSGHVPASVGSLEHLLTLNLSRNHLDGPLSAEFGNLRSIQIIDMSFNNLSGSIPPEIGQLQNLASLILNNNDLHGKIPEQLTNCFSLSSMNFSYNNFTGVVPSSKNFTRFPADSFFGNPLLCGNWVGSICRPYLPKSREIFSRVAVACLTLGIIVLLAMVIIAIYRSIQSKQLLKASSMSDLVPPKLVVLHMDLAIHTLDDIMRSTENLSEKFIIGYGASSTVYKCVLKNSRPIAVKRLYNQHPHNLREFETELVTIGSIRHRNLVVLHGYALTPYANLLFYEYMANGSLWDLLHGPLKVKLDWETRMRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCIPATKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILSKADNNTVMEAVDPEVSVTCVDLAHVKKTFQLALLCTKKNPSERPTMHEVTRVLISLLPAPPSKVIAATGKSFDYAPFVVDKGQHHRKLDGLQPQRDNNSSNAQWFVRFGDAISKDSL* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4624 999 SMART LRR_typ_2 521 545 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 425 448 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 353 376 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 234 258 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 377 401 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 162 186 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 114 138 IPR003591 -
Psa6g4624 999 SMART LRR_typ_2 473 496 IPR003591 -
Psa6g4624 999 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515
Psa6g4624 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Psa6g4624 999 Pfam Protein kinase domain 674 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4624 999 SMART serkin_6 670 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4624 999 Pfam Leucine rich repeat 451 510 IPR001611 GO:0005515
Psa6g4624 999 Gene3D Ribonuclease Inhibitor 209 301 IPR032675 -
Psa6g4624 999 Gene3D Ribonuclease Inhibitor 44 208 IPR032675 -
Psa6g4624 999 SUPERFAMILY RNI-like 119 563 - -
Psa6g4624 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 35 967 - -
Psa6g4624 999 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Psa6g4624 999 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Psa6g4624 999 Gene3D Transferase(Phosphotransferase) domain 1 746 944 - -
Psa6g4624 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 35 967 - -
Psa6g4624 999 Gene3D Phosphorylase Kinase; domain 1 633 745 - -
Psa6g4624 999 Gene3D Ribonuclease Inhibitor 304 593 IPR032675 -
Psa6g4624 999 SUPERFAMILY RNI-like 285 371 - -
Psa6g4624 999 SUPERFAMILY Protein kinase-like (PK-like) 653 935 IPR011009 -
Psa6g4624 999 ProSiteProfiles Protein kinase domain profile. 670 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4624 Psa-Chr6 402336860 402343677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4624 116 999 Receptor kinase-like Gene Family AT5G07180 76.158 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Psa6g4624 Pkinase 7.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4624 K20718 - gmx:100811653 1665.59