Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4620 ATGATGGATCTTGTTATCGGTGGAAAATTCAAACTTGGGAGGAAAATTGGGAGTGGATCATTTGGAGAGCTTTATTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTGGCTGTTAAGCTGGAACCTGTGAAGACAAAGCATCCTCAACTTCTCTATGAATCCAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTCATATAAAGTGGTCTGGAGTCGAGGGAGACTACAATGTCATGGCTATCGACCTTCTTGGACCCAGTCTCGAAGACTTATTTAACTATTGCAGTAGAAAATTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTAATAAACAGAGTTGAGTATATGCACTCTAGGGGCTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTACGGTCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAAGGAAAACAAGAACCTCACCGGAACTGCTCGATATGCAAGTGTTAATACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGTACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAGTTACACCCAACAGAATTCACATCATACTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTTAAGAGGCTCTTTCGGGACCTGTTCATTAGAGAAGGTTATCAGTTTGACTATATATTTGATTGGACTATATTGAAGTATCCACAAATCGGATCCAGCTCTAGAACACGGCCGAGTGTGAAACCAGCCTTAAACCCAGCACCATCTGGAGAGCGATTAGAACGACCTTCAGTTGGACAAGAGATTCGAGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGTTCTGGGCATGGACTGCATAAGGATCTTTCCAAGCATAGGTCTTTAGATAATATGCCATCTCCTAAAGATGTGCAACCTGATTCTGACAGGGCTCGCAGTTCAACTCGTAATGGCAGTTCTTCAAAAAGGCCTATGATATCAAGCAGCAGACCAAGCTCTTCCGGGGAGCCTAGTGAAGGCCGGTCTAGCAGACTGGTCTCGAGTAGTAGTCGTTTATCTTCTACTCAGAGGGTTCAACCAGGTTTTGAATCCAAATCATCCTTCACCCGTGCTGCCACCGCAGGGACACGAGGTAGCCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACAGGTAAAAGGAAATGA 1398 0.4249 MMDLVIGGKFKLGRKIGSGSFGELYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYKENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKLHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTILKYPQIGSSSRTRPSVKPALNPAPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSGHGLHKDLSKHRSLDNMPSPKDVQPDSDRARSSTRNGSSSKRPMISSSRPSSSGEPSEGRSSRLVSSSSRLSSTQRVQPGFESKSSFTRAATAGTRGSRDDTLKSFELLSIGTGKRK* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4620 465 Gene3D Transferase(Phosphotransferase) domain 1 1 323 - -
Psa6g4620 465 MobiDBLite consensus disorder prediction 304 451 - -
Psa6g4620 465 MobiDBLite consensus disorder prediction 378 447 - -
Psa6g4620 465 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Psa6g4620 465 PANTHER CASEIN KINASE-RELATED 2 445 - -
Psa6g4620 465 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Psa6g4620 465 CDD STKc_CK1_delta_epsilon 9 283 - -
Psa6g4620 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Psa6g4620 465 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 445 - -
Psa6g4620 465 SMART serkin_6 10 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4620 465 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4620 465 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4620 465 MobiDBLite consensus disorder prediction 348 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4620 Psa-Chr6 402281150 402286508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4620 9 214 MAP Kinase Kinase Kinase AT3G06030 26.852 2.14e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa6g4620 Pkinase 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4620 K08960 - jre:108991207 783.482