Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4600 ATGTTTACTAATAATCAAATTTCGGACTCGCATGATTCATGTTCATCTTCGGAGAGGTTTCTCAAGCCGAAAAAACCTGCGGGAAGGAAAAAGTTCAGAGAAACGCGCCACCCGATATACCGTGGTGTCAGAAAGAGGGATTCTGGAAAGTGGGTGTGTGAAGTGAGAGAGCCCAACAAGAAAACAAGAATCTGGCTAGGGACGTTTCTAACTCCTGAGATGGCCGCGCGTGCGCATGACGTTGCCGCGATTGCGCTTAGAGGAAACTCTGCTTGTCTTAATTTTGCTGACTCTACTTGGAGGTTGCCGGTTCCGGCTACGTCGGATGCGAGAGATATTCAAAAGGCGGCGGCAGAGGCAGGCGAGGCTTTCCGGCCGGAGACTAAGTTTCAGAACAGTGAGGACATTGAGGAGAGGAAGGATAATGAGTTATCGTCGACGGTGATGGTGGCAGGGCCGGAGACGGCGATGGAGCAACGAGAGGAAGAAGAGGATACAGTGCCGGAGTATTTGAGAAACATGGTTTTTACGTCACCTGCACGTTACTGGGGGAACGAGTTTTGTTTTGATGACGTGGAATTTGGTGATACTGAAGTTTCATTATGGAGTTACTAA 615 0.4911 MFTNNQISDSHDSCSSSERFLKPKKPAGRKKFRETRHPIYRGVRKRDSGKWVCEVREPNKKTRIWLGTFLTPEMAARAHDVAAIALRGNSACLNFADSTWRLPVPATSDARDIQKAAAEAGEAFRPETKFQNSEDIEERKDNELSSTVMVAGPETAMEQREEEEDTVPEYLRNMVFTSPARYWGNEFCFDDVEFGDTEVSLWSY* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4600 204 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Psa6g4600 204 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Psa6g4600 204 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Psa6g4600 204 MobiDBLite consensus disorder prediction 1 36 - -
Psa6g4600 204 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Psa6g4600 204 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Psa6g4600 204 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Psa6g4600 204 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Psa6g4600 204 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Psa6g4600 204 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 22 202 - -
Psa6g4600 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 202 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4600 Psa-Chr6 399950566 399951993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4600 23 204 AP2-EREBP Transcription Factor Family AT4G25470 58.201 3.71e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g4600 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4600 - K09286 aprc:113872706 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4600 6 399950566 399951993 Psa6g4600 6 399950566 399951993 ECH
Psa1g2413 1 199799962 199802755 Psa6g4600 6 399950566 399951993 PCT