Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4598 ATGTATAACTACTGCCACTATCATCAAATTCTCTCTAATACCATTTCCAAAAACATTAAGAAAACTAAAACAATAACACATTTTTTTTATCATATGTGCTTAGTTAACCTACAACAACCAAACCAACAACTTTTTTTATTATTTTTCTTCTTCTTCATGGATGGCAACAACCCTTATAACTCTCCTACAGTTCCACCACCACCACCACCTATACAACTACCTAAAGTAGTTACTTCTTCATCTGCACCAACAACTCCTTCATCTTCATCTTCATCCACCCCGGTGGTTACGACCGGTGCTGTTGTCGGACGATACCGTGGAACCCGTTGCAGGAGTGGGAAATGGGTGTCTGAGATACGTGAGCCGCGTAAAACGAAGCGCATTTGGTTAGGGACATACCCTAAAGCTGAAATGGCAGCAGCTGCTTATGATGTTGCTGCTCTTGCTTTGAAAGGACCTGATACGACTCTTAACTTTCCCGATTCGGTGCTTTCTTACCCTATTCCAGCTTCTTTGTCTTCGACTGATATTCGTGCCGCGGCTGAAGCTGCTGCACAGGCGAAAATCATGAGAGGAAGTTCTTCAGCTAGTAGTGGAATGCAACAACAACAACAGCAACAAGGTTATGAATATATTGACGAGGATGAGTTGTTGAATATGCCGAATTTGTTGGATGATATGGCTAGAGGAATGCAGGTTAGTCCACCAAGGATGACCTCGTTTTCGAATTATTCTTCGGACGATCATTCGCCGAGGAATTCTGATGGAGGAGATGATAATCTATGGGGTTACACTTTTTGA 801 0.4232 MYNYCHYHQILSNTISKNIKKTKTITHFFYHMCLVNLQQPNQQLFLLFFFFFMDGNNPYNSPTVPPPPPPIQLPKVVTSSSAPTTPSSSSSSTPVVTTGAVVGRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPKAEMAAAAYDVAALALKGPDTTLNFPDSVLSYPIPASLSSTDIRAAAEAAAQAKIMRGSSSASSGMQQQQQQQGYEYIDEDELLNMPNLLDDMARGMQVSPPRMTSFSNYSSDDHSPRNSDGGDDNLWGYTF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4598 266 SUPERFAMILY DNA-binding domain 105 162 IPR016177 GO:0003677
Psa6g4598 266 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700|GO:0006355
Psa6g4598 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 100 264 - -
Psa6g4598 266 SMART rav1_2 104 166 IPR001471 GO:0003700|GO:0006355
Psa6g4598 266 MobiDBLite consensus disorder prediction 242 261 - -
Psa6g4598 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 100 264 - -
Psa6g4598 266 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Psa6g4598 266 ProSiteProfiles AP2/ERF domain profile. 104 160 IPR001471 GO:0003700|GO:0006355
Psa6g4598 266 Pfam AP2 domain 110 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4598 Psa-Chr6 399800362 399803118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4598 105 264 AP2-EREBP Transcription Factor Family AT5G52020 53.216 2.01e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa6g4598 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4598 - - mtr:MTR_1g101550 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4598 6 399800362 399803118 Psa6g4598 6 399800362 399803118 ECH