Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4596 ATGGCTCCATCGGTGGAACACAATGGTGATTCCTCAACCGGCGAGTCTCAAAGATCAACTCCGACACCGTTTATCACCAAGACGTACCAGATCGTTGATGATCGCACCATCGACGACGTCGTTTCATGGAACGATACCGGGACATCCTTCGTCGTTTGGAATCCTACCGTTTTCGCGAGGGATTTGCTTCCTAAATATTTCAAGCACAATAATTTCTCCAGCTTCGTACGCCAACTCAATACTTATGGATTTAAAAAAGTTGTGCCTGATCGCTGGGAATTCTCTAACGAATGCTTTCGAAGAGGCGAGAAACGCCTTCTATATGATATTCAGCGACGGAAAATCGTTTCAAAATCGACGCCGGCGGTTACCAATGCCGGTGCAACTGCGACAGTAGCGGTGTCTTCTCCGTTACATTCGGTTTCAGTTCCGCCTCCAAAGTCGATCGTTTCGCCGTCAATTTCGGGAGAGGAGCAGGTGATTTCTTCTGATTCGTCGCCGTTTGAGCAGGCGGCGCTATTAGAAGAGAATGATAGGCTTAGAAAGGAGAACATGCAGTTAAGGACGGAAACAGAGGACATGAAATCCCTCTTCAATAATATTTTCAATCTTATGTCTAATTATGCCAAATTTCAAGCGGAAAGTGGTGCACAAGGAAAAGAGTGTTGCTCCACGGCATCGAAGACGCTTCATCTATTGCCGGAGAAGCGGTGCGATGGCGAAGATGCGTCGGAGATAGTGATGGAGGATAACTACCCGAAACTGTTTGGAGTGGCGATAGGTACGAAGCGAGCGAGAGAAGAAGGAAGGGGTGATGAAGATAATTCGGTGTTGAGCCTGCATCAACCAGTTAATGTGGACTGGAAATCAGAGTCGTTAGATTCACATAACGGCGTAAAGAGGAAAACGATGTGGCTAAATAAGTGGTTCAAAGCGAATCAGAGTGTGTGCAATTGA 957 0.4671 MAPSVEHNGDSSTGESQRSTPTPFITKTYQIVDDRTIDDVVSWNDTGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNECFRRGEKRLLYDIQRRKIVSKSTPAVTNAGATATVAVSSPLHSVSVPPPKSIVSPSISGEEQVISSDSSPFEQAALLEENDRLRKENMQLRTETEDMKSLFNNIFNLMSNYAKFQAESGAQGKECCSTASKTLHLLPEKRCDGEDASEIVMEDNYPKLFGVAIGTKRAREEGRGDEDNSVLSLHQPVNVDWKSESLDSHNGVKRKTMWLNKWFKANQSVCN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4596 318 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 300 IPR027725 -
Psa6g4596 318 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4596 318 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4596 318 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4596 318 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g4596 318 Coils Coil 170 197 - -
Psa6g4596 318 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4596 318 Gene3D - 16 114 IPR036388 -
Psa6g4596 318 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Psa6g4596 318 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4596 318 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4596 318 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4596 Psa-Chr6 399759001 399760624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4596 13 318 HSF AT5G62020 45.988 1.60e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa6g4596 HSF_DNA-bind 5.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4596 K09419 - gmx:100780987 358.221