Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4595 ATGGCTTTTTCTTTTAAGATTATTGTTCTCTCGTACCTTGTGGTGTTCCAGTTCTGTTACGCAGTTGAAGATAAACATGAACAAAACCCAGAAAAGCTTTCGCTGCTTTCTTTTAAAGAGTCTCTTCAAAACTCGAACTTTCTTTCTTCATGGCACTCTGCAACTCCTCACTGTAACTGGGTTGGTGTCACGTGTCAACTCGGACGAGTCACCTCGCTCTCTCTTCCTTCTCATTACCTTAAAGGCAATCTCTCTTTGTCTATTTCGTCTCTATCTTTTCTTACTGTCATCAACCTTGAAGATAATCAGTTTTCCGGCGAAATCCCCGGTGAGGTTGGTCGGTTGTTACAACTGAAGACTCTTAGACTCGGTTCTAACTCGTTCACCGGGAATATTCCACCGGAGTTTGGGCGGTTAACGAAGCTACACACGCTTGACCTCTCCGGAAATGCACTAGACGGAGAAATACCGGAGAGTTTCGGGAACTTGACCAAGCTTCAGTTTCTGGACCTTAGTAACAACATTCTATCAGGTTCTCTTCCGTTAACTCTTTTAACCGGAACACTCTCTTTGATTTCTGTTGATATTTCGAACAACTCGTTTTCCGGCGAACTTCCGTCGGAAATCGGAAACTGGAAGAATCTCACTGCACTTTACGTTGGGATAAACAAGTTGTCTGGTACATTGCCTAAGGAGATTGGAAAGCTTTCGAAGCTTGAAATTTTGTATTCACCTTCTTGCTTGATCGAAGGCCCATTACCTGAAGAAATGGAGAACCTGAAAGCGTTGACTAAACTTGACCTTTCTTATAACCCTTTGAAATGTTCAATCCCAAAGTTTATTGGGAAGTTGAAAAATCTGAAAATTTTGAACCTTGTCTTTTCTGAGCTTAATGGGTCAGTTCCATCAGAGCTTGGAAACTGTTCAAATTTAACTTCTGTGATGCTTTCTTTCAACTCACTTTCTGGTTCACTACCTCAAGAGCTTTCTGCGCTTCCTATAAGAACTTTCTCAGCTGAAAAGAATCTTCTCCATGGACCTTTGCCTTCTTGGCTTGGAAAATGGACTAATGTTGATTCTCTTTTGCTTTCGGCAAATCGATTTTCGGGTGTGATTCCGCCGGAGCTTGGGAATTGTTCTGTGATGGAGCATCTCAGTTTGAGTAGCAACTTGTTGACCGGTCATATACCTGAGGAGCTTTGTAATGCTGCTTCACTTTTGGAGATTGATCTTGATGATAACTATCTTAGTGGAACAATTGAGAAGGCTTTTGTTAATTGTAAGAACCTTACTCATTTGTGGAATTTATCAACTCTGATGGAGTTTTCCGCCGCAAATAACCACTTGGAGGGTTCACTTCCTGTGGAGATTGGGAGTGCTGTAATTCTACAAAGGCTTGTTCTTAGCAATAACCGTCTCAAAGGTACCATTCCGAAGGAAATCGGAAGTCTTCAAAGTCTTTCGGTTTTTAATTTGAATGGAAACATGCTTGAAGGAAACATTCCGATTGAGCTTGGTGATTGCGTTTCACTCACTACATTGGACCTTGGAAACAATCAACTCAATGGCCCTATTCCGGACAAATTGGTGGAACTAAGTGAATTACAGTGCTTAGTACTTTCTCACAATAATCTTTCAGGGTCTATTCCTTCGAAGGAATCCTTGTATTTTCGACAACTTACGGTTCCTGATTTGAGCTTTGTTCAACACCTTGGTGTGTTTGATCTCTCTCACAATAGATTGTCTGGCACCATACCTGATGAATTGGGAAGCTGTGTAGTAGTTGTGGATCTATTGCTTAGCAACAACATGCTTTCCGGGAGCATTCCGAGATCACTCTCGCGTTTGACGAATCTAACAACTTTGGATTTGTCTGGAAACTTGTTGTCAGGTTCCATTCCAGCAGAGCTTGGAGATGCTGTCACACTCCAAGGAAATATGTTGTTTGGTTCAATTCCAATTAGTTTTGGGAACATGAAGGAAATACAGGCTTTCAGGCCAGTGGGGGAGCTTTTCTCAAACTCCATGACATGGAGGATCGAGACAATGAATTTAAGCCACAATTGCTTTGACGAAACTTGCCGTGGTCTTGGGAAATCTTTCATATTTGTGCGGAATTTAGATCTTCATCAGAATCAGTTGACCGATTCCAGAGAAGTATGCAGCCTAGTTAATTTGAATTACCTAGATTTGTCGCAAAACAGATTGGAAGGGCTATTCCAAGAACTGGTATTTGCCAAAACCTTTCAAGGGTTTCGATTTGTGGGAAACATAAACCTTTGTGGCCAGATGTTGGGTACAAATTGTGAGGTCAAAAGCATCAGTAGATATGCATTGTTTAATGCACTGGAGGCTTGGTGGAATCGCCATTACGCAAACAAACATAATGCGGAGACGGGAGGTTTCGGAACTGTGTATAGAGCTTTTTTCCTCCCCTTTTTTCTCCTTCCCCCCTTCCCTTCTTTTCTTTTCTCTTCCTTATCCCCTCTCTTATCAAATGAAGAACAGTTTGCCGTGAAGAAGCTTAGTGAAGCTAAAACGCAAGGTCATCGCGAGTTCATGGCGGAAATGGAAACCTTAGGAAGATCAACAACAAGAGGCGATGTCTACAGTTTCGGTGTCATTTTGCTTGAACTGGTGACTGGAAAAGAACCGACGGGACCAGATTTCAAAGAGATTGAAGGCGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGTCAGGCTGCTGTTGTTCTTGATCCAACAGTTCTCGACGCTGATTCGAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTTTGTCTCTCTGATAATCCAGCAAACAGGCCTACCATGTTTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGAGATGAGTGA 2892 0.4225 MAFSFKIIVLSYLVVFQFCYAVEDKHEQNPEKLSLLSFKESLQNSNFLSSWHSATPHCNWVGVTCQLGRVTSLSLPSHYLKGNLSLSISSLSFLTVINLEDNQFSGEIPGEVGRLLQLKTLRLGSNSFTGNIPPEFGRLTKLHTLDLSGNALDGEIPESFGNLTKLQFLDLSNNILSGSLPLTLLTGTLSLISVDISNNSFSGELPSEIGNWKNLTALYVGINKLSGTLPKEIGKLSKLEILYSPSCLIEGPLPEEMENLKALTKLDLSYNPLKCSIPKFIGKLKNLKILNLVFSELNGSVPSELGNCSNLTSVMLSFNSLSGSLPQELSALPIRTFSAEKNLLHGPLPSWLGKWTNVDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGHIPEELCNAASLLEIDLDDNYLSGTIEKAFVNCKNLTHLWNLSTLMEFSAANNHLEGSLPVEIGSAVILQRLVLSNNRLKGTIPKEIGSLQSLSVFNLNGNMLEGNIPIELGDCVSLTTLDLGNNQLNGPIPDKLVELSELQCLVLSHNNLSGSIPSKESLYFRQLTVPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPAELGDAVTLQGNMLFGSIPISFGNMKEIQAFRPVGELFSNSMTWRIETMNLSHNCFDETCRGLGKSFIFVRNLDLHQNQLTDSREVCSLVNLNYLDLSQNRLEGLFQELVFAKTFQGFRFVGNINLCGQMLGTNCEVKSISRYALFNALEAWWNRHYANKHNAETGGFGTVYRAFFLPFFLLPPFPSFLFSSLSPLLSNEEQFAVKKLSEAKTQGHREFMAEMETLGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAAVVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGDE* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4595 963 ProSiteProfiles Leucine-rich repeat profile. 534 556 IPR001611 GO:0005515
Psa6g4595 963 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Psa6g4595 963 Gene3D Ribonuclease Inhibitor 642 771 IPR032675 -
Psa6g4595 963 SUPERFAMILY RNI-like 342 634 - -
Psa6g4595 963 SUPERFAMILY RNI-like 566 769 - -
Psa6g4595 963 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Psa6g4595 963 Gene3D Ribonuclease Inhibitor 557 641 IPR032675 -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 13 123 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 831 861 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 335 433 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 117 354 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 862 961 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 79 241 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 432 770 - -
Psa6g4595 963 Gene3D Transferase(Phosphotransferase) domain 1 826 961 - -
Psa6g4595 963 SMART LRR_typ_2 260 284 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 139 162 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 568 592 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 163 187 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 616 640 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 532 556 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 484 508 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 91 115 IPR003591 -
Psa6g4595 963 SMART LRR_typ_2 723 747 IPR003591 -
Psa6g4595 963 PRINTS Leucine-rich repeat signature 166 179 - -
Psa6g4595 963 PRINTS Leucine-rich repeat signature 723 736 - -
Psa6g4595 963 SUPERFAMILY L domain-like 48 333 - -
Psa6g4595 963 SMART LRR_sd22_2 508 534 - -
Psa6g4595 963 SMART LRR_sd22_2 616 637 - -
Psa6g4595 963 SMART LRR_sd22_2 139 165 - -
Psa6g4595 963 SMART LRR_sd22_2 723 741 - -
Psa6g4595 963 SMART LRR_sd22_2 260 285 - -
Psa6g4595 963 Gene3D Ribonuclease Inhibitor 335 432 IPR032675 -
Psa6g4595 963 Gene3D Ribonuclease Inhibitor 186 334 IPR032675 -
Psa6g4595 963 SUPERFAMILY Protein kinase-like (PK-like) 863 958 IPR011009 -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 862 961 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 335 433 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 13 123 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 432 770 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 79 241 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 117 354 - -
Psa6g4595 963 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 831 861 - -
Psa6g4595 963 ProSiteProfiles Leucine-rich repeat profile. 165 186 IPR001611 GO:0005515
Psa6g4595 963 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Psa6g4595 963 Pfam Leucine rich repeat 463 521 IPR001611 GO:0005515
Psa6g4595 963 Gene3D Ribonuclease Inhibitor 433 556 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4595 Psa-Chr6 399677149 399681341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4595 861 957 Receptor kinase-like Gene Family AT5G07280 63.918 1.18e-31 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Psa6g4595 LRR_8 1.1e-06 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4595 - - csv:101215443 780.4